miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU730899.1/86003-86096 15368:Brachypodium
distachyon
Length = 94
Score = 61.9 bits (31), Expect = 1e-09
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 6 atactccctccgtctcaaaataagtgacgtagatttgtataagattctaaacaaattcat 65
|||| ||||||||| |||||||||||| || |||||||||| || || |||||| |||
Sbjct: 91 ataccccctccgtcccaaaataagtgatgtggatttgtatagatttttatacaaatccat 32
Query: 66 gtcacttattt 76
|||||||||||
Sbjct: 31 gtcacttattt 21
Score = 50.1 bits (25), Expect = 5e-06
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 21 caaaataagtgacgtagatttgtataagattctaaacaaattcatgtcacttatttcggg 80
||||||||||||| | ||||||||||| | |||| |||||| || |||||||||| |||
Sbjct: 19 caaaataagtgacatggatttgtataaaaatctatacaaatccacatcacttattttggg 78
Query: 81 a 81
|
Sbjct: 79 a 79
>RF00906;MIR1122;EU730902.1/34504-34625 15368:Brachypodium
distachyon
Length = 122
Score = 60.0 bits (30), Expect = 6e-09
Identities = 61/70 (87%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 23 aaataagtgacgtagatttgtataagattctaaacaaattcatgtcacttatttcgggat 82
||||||||||||| |||||||||| || | || |||||| || |||||||||| ||||||
Sbjct: 50 aaataagtgacgtggatttgtataggaat-tatacaaatccacgtcacttattgcgggat 108
Query: 83 gaagggagta 92
| ||||||||
Sbjct: 109 ggagggagta 118
Score = 52.0 bits (26), Expect = 1e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 9 ctccctccgtctcaaaataagtgacgtagatttgtata 46
||||||||||| | ||||||||||||| ||||||||||
Sbjct: 7 ctccctccgtcccgaaataagtgacgtggatttgtata 44
Score = 50.1 bits (25), Expect = 5e-06
Identities = 62/73 (84%), Gaps = 1/73 (1%)
Strand = Plus / Minus
Query: 4 atatactccctccgtctcaaaataagtgacgtagatttgtataagattctaaacaaattc 63
||||||||||||| || | |||||||||||| ||||||||||| | ||| |||||| |
Sbjct: 121 atatactccctccatcccgcaataagtgacgtggatttgtataa-ttcctatacaaatcc 63
Query: 64 atgtcacttattt 76
| |||||||||||
Sbjct: 62 acgtcacttattt 50
>RF00906;MIR1122;FJ581044.1/175385-175266 4538:Oryza glaberrima
(African rice)
Length = 120
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 4 atatactccctccgtctcaaaataagt 30
|||||||||||||||||||||||||||
Sbjct: 119 atatactccctccgtctcaaaataagt 93
>RF00906;MIR1122;AF427791.1/40179-40064 4513:Hordeum vulgare
Length = 116
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 4 atatactccctccgtctcaaaataagtgac 33
|||||||| |||||||||||||||||||||
Sbjct: 2 atatactctctccgtctcaaaataagtgac 31
>RF00906;MIR1122;U29095.1/333-439 4565:Triticum aestivum (bread
wheat)
Length = 107
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 3 aatatactccctccgtctcaaaataagtg 31
||||||||||||||||| |||||||||||
Sbjct: 1 aatatactccctccgtcccaaaataagtg 29
>RF00906;MIR1122;DQ267106.1/62901-62968 4572:Triticum urartu
Length = 68
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 3 aatatactccctccgtctcaaaataagtg 31
||||||||||||||||| |||||||||||
Sbjct: 1 aatatactccctccgtcccaaaataagtg 29
>RF00906;MIR1122;FJ491378.1/4581-4466 4550:Secale cereale (rye)
Length = 116
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 5 tatactccctccgtctcaaaataagtgac 33
||||||||||||||| |||||||||||||
Sbjct: 114 tatactccctccgtcccaaaataagtgac 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 4 atatactccctccgtctcaaaataagtgac 33
|||||||||||| ||| |||||||||||||
Sbjct: 2 atatactccctctgtcccaaaataagtgac 31
>RF00906;MIR1122;AF521177.1/81577-81474 4513:Hordeum vulgare
Length = 104
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 5 tatactccctccgtctcaaaataagtgac 33
||||||||||||||| |||||||||||||
Sbjct: 102 tatactccctccgtcccaaaataagtgac 74
>RF00906;MIR1122;AJ234583.1/157-260 4513:Hordeum vulgare
Length = 104
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 6 atactccctccgtctcaaaataagt 30
|||||||||||||||||||||||||
Sbjct: 4 atactccctccgtctcaaaataagt 28
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 7 tactccctccgtctcaaaataa 28
||||||||||||||||||||||
Sbjct: 100 tactccctccgtctcaaaataa 79
>RF00906;MIR1122;AJ234485.1/114-218 4513:Hordeum vulgare
Length = 105
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 7 tactccctccgtctcaaaataagtg 31
|||||||||||||||||||||||||
Sbjct: 5 tactccctccgtctcaaaataagtg 29
>RF00906;MIR1122;FJ236275.1/674-570 4573:Aegilops speltoides
Length = 105
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 7 tactccctccgtctcaaaataagtg 31
|||||||||||||||||||||||||
Sbjct: 5 tactccctccgtctcaaaataagtg 29
>RF01058;MIR806;AAAA02021561.1/35714-35484 39946:Oryza sativa
Indica Group
Length = 231
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 6 atactccctccgtctcaaaataag 29
||||||||||||||||||||||||
Sbjct: 1 atactccctccgtctcaaaataag 24
>RF00906;MIR1122;AJ249141.1/1014-910 4513:Hordeum vulgare
Length = 105
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 5 tatactccctccgtctcaaaataa 28
||||||||||||||||||||||||
Sbjct: 103 tatactccctccgtctcaaaataa 80
>RF00906;MIR1122;EU282768.1/632-528 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 7 tactccctccgtctcaaaataagt 30
||||||||||||||||||||||||
Sbjct: 101 tactccctccgtctcaaaataagt 78
>RF00906;MIR1122;AK249769.1/2180-2285 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 106
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 4 atatactccctccgtctcaaaataagtg 31
||||||||||||||||| ||||||||||
Sbjct: 2 atatactccctccgtcttaaaataagtg 29
>RF00906;MIR1122;EU282755.1/953-849 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 4 atatactccctccgtctcaaaataagtg 31
|||||||||||||||| |||||||||||
Sbjct: 104 atatactccctccgtcccaaaataagtg 77
>RF00906;MIR1122;EU282771.1/632-528 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 7 tactccctccgtctcaaaataagt 30
||||||||||||||||||||||||
Sbjct: 101 tactccctccgtctcaaaataagt 78
>RF00906;MIR1122;FJ374625.1/3001-2870 4573:Aegilops speltoides
Length = 132
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 6 atactccctccgtctcaaaataagtgac 33
|||||||||||||| |||||||||||||
Sbjct: 4 atactccctccgtcccaaaataagtgac 31
>RF00906;MIR1122;AAAA02000585.1/2941-3070 39946:Oryza sativa Indica
Group
Length = 130
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 4 atatactccctccgtctcaaaata 27
||||||||||||||||||||||||
Sbjct: 129 atatactccctccgtctcaaaata 106
>RF00906;MIR1122;AJ400714.1/3663-3767 4565:Triticum aestivum (bread
wheat)
Length = 105
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 5 tatactccctccgtctcaaaataagtg 31
||||||||||||||| |||||||||||
Sbjct: 103 tatactccctccgtcccaaaataagtg 77
>RF00906;MIR1122;FJ184990.1/3303-3406 4565:Triticum aestivum
(bread wheat)
Length = 104
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 5 tatactccctccgtctcaaaataagtg 31
||||||||||||||| |||||||||||
Sbjct: 3 tatactccctccgtcccaaaataagtg 29
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 6 atactccctccgtctcaaaataagtg 31
|||||||||||||| |||||||||||
Sbjct: 101 atactccctccgtcccaaaataagtg 76
>RF00906;MIR1122;AJ507395.1/7785-7899 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 115
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 7 tactccctccgtctcaaaataagtgac 33
||||||||||||| |||||||||||||
Sbjct: 111 tactccctccgtcccaaaataagtgac 85
>RF00906;MIR1122;DQ900687.1/24296-24401 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 106
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 4 atatactccctccgtctcaaaataagtgacg 34
||||||||||| ||||| |||||||||||||
Sbjct: 2 atatactcccttcgtcttaaaataagtgacg 32
>RF00906;MIR1122;AF181455.1/3108-2994 4513:Hordeum vulgare
Length = 115
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 7 tactccctccgtctcaaaataagtgac 33
||||||||||||| |||||||||||||
Sbjct: 111 tactccctccgtcccaaaataagtgac 85
>RF00906;MIR1122;FJ477093.1/40908-41001 4513:Hordeum vulgare
Length = 94
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 3 aatatactccctccgtctcaaaataagtgac 33
||||||||||||| ||| |||||||||||||
Sbjct: 1 aatatactccctctgtcccaaaataagtgac 31
>RF00906;MIR1122;DQ995510.1/1615-1718 4513:Hordeum vulgare
Length = 104
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 atactccctccgtctcaaaataa 28
|||||||||||||||||||||||
Sbjct: 4 atactccctccgtctcaaaataa 26
>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
Length = 105
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 5 tatactccctccgtctcaaaataagtg 31
||||||||||||||| |||||||||||
Sbjct: 3 tatactccctccgtcccaaaataagtg 29
>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
Length = 105
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 5 tatactccctccgtctcaaaataagtg 31
||||||||||||||| |||||||||||
Sbjct: 3 tatactccctccgtcccaaaataagtg 29
>RF00906;MIR1122;EU282251.1/1314-1209 52152:Elymus repens
Length = 106
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 5 tatactccctccgtctcaaaataagtg 31
||||||||||||||| |||||||||||
Sbjct: 104 tatactccctccgtcccaaaataagtg 78
>RF00906;MIR1122;AAAA02022195.1/27114-27226 39946:Oryza sativa
Indica Group
Length = 113
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 atactccctccgtctcaaaataa 28
|||||||||||||||||||||||
Sbjct: 4 atactccctccgtctcaaaataa 26
>RF00906;MIR1122;AAAA02019740.1/10862-10702 39946:Oryza sativa
Indica Group
Length = 161
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 5 tatactccctccgtctcaaaata 27
|||||||||||||||||||||||
Sbjct: 159 tatactccctccgtctcaaaata 137
>RF00906;MIR1122;AC130607.2/121928-122037 39947:Oryza sativa
Japonica Group
Length = 110
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 atatactccctccgtctcaaaat 26
|||||||||||||||||||||||
Sbjct: 2 atatactccctccgtctcaaaat 24
>RF01058;MIR806;AP008208.1/6823788-6823544 39947:Oryza sativa
Japonica Group
Length = 245
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 6 atactccctccgtctcaaaataagtg 31
|||||||||||||| |||||||||||
Sbjct: 245 atactccctccgtcccaaaataagtg 220
>RF01058;MIR806;AACV01025022.1/35011-35254 39947:Oryza sativa
Japonica Group
Length = 244
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 6 atactccctccgtctcaaaataagtg 31
|||||||||||||| |||||||||||
Sbjct: 1 atactccctccgtcccaaaataagtg 26
>RF01058;MIR806;AAAA02004537.1/25464-25706 39946:Oryza sativa
Indica Group
Length = 243
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 6 atactccctccgtctcaaaataagtg 31
|||||||||||||| |||||||||||
Sbjct: 1 atactccctccgtcccaaaataagtg 26
>RF01058;MIR806;AAAA02009876.1/3121-2881 39946:Oryza sativa Indica
Group
Length = 241
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 6 atactccctccgtctcaaaataagtg 31
|||||||||||||| |||||||||||
Sbjct: 241 atactccctccgtcccaaaataagtg 216
>RF00906;MIR1122;AC174352.7/5727-5571 3880:Medicago truncatula
(barrel medic)
Length = 157
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 6 atactccctccgtctcaaaata 27
||||||||||||||||||||||
Sbjct: 154 atactccctccgtctcaaaata 133
>RF00906;MIR1122;DQ871219.1/106890-106994 85692:Triticum turgidum
subsp. dicoccoides
Length = 105
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 6 atactccctccgtctcaaaataagtg 31
|||||||||||||| |||||||||||
Sbjct: 4 atactccctccgtcccaaaataagtg 29
>RF00906;MIR1122;AP008214.1/14410723-14410632 39947:Oryza sativa
Japonica Group
Length = 92
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 6 atactccctccgtctcaaaataagtg 31
|||||||||||||| |||||||||||
Sbjct: 4 atactccctccgtcccaaaataagtg 29
>RF00906;MIR1122;AAAA02017506.1/14634-14505 39946:Oryza sativa
Indica Group
Length = 130
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 4 atatactccctccgtctcaaaa 25
||||||||||||||||||||||
Sbjct: 129 atatactccctccgtctcaaaa 108
>RF00906;MIR1122;AAAA02026943.1/18413-18317 39946:Oryza sativa
Indica Group
Length = 97
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 7 tactccctccgtctcaaaataa 28
||||||||||||||||||||||
Sbjct: 93 tactccctccgtctcaaaataa 72
