miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01058;MIR806;AP005184.5/84409-84174 39947:Oryza sativa Japonica
Group
Length = 236
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 actccctccgttccataatataagg 33
|||||||||||||||||||||||||
Sbjct: 3 actccctccgttccataatataagg 27
Score = 44.1 bits (22), Expect = 0.001
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 222 ccttatatcatggaacggagggagta 247
|||||||| |||||||||||||||||
Sbjct: 27 ccttatattatggaacggagggagta 2
>RF01058;MIR806;AP003960.2/91001-90759 39947:Oryza sativa Japonica
Group
Length = 243
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 actccctccgttccataatataagg 33
|||||||||||||||||||||||||
Sbjct: 3 actccctccgttccataatataagg 27
Score = 48.1 bits (24), Expect = 6e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 10 ctccctccgttccataatataagg 33
||||||||||||||||||||||||
Sbjct: 240 ctccctccgttccataatataagg 217
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 222 ccttatatcatggaacggagggagtat 248
|||||||| ||||||||||||||||||
Sbjct: 27 ccttatattatggaacggagggagtat 1
>RF00906;MIR1122;AAAA02012907.1/4650-4807 39946:Oryza sativa
Indica Group
Length = 158
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 actccctccgttccataatataagg 33
|||||||||||||||||||||||||
Sbjct: 6 actccctccgttccataatataagg 30
Score = 44.1 bits (22), Expect = 0.001
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 222 ccttatatcatggaacggagggagta 247
|||||||| |||||||||||||||||
Sbjct: 30 ccttatattatggaacggagggagta 5
>RF00906;MIR1122;AACV01009198.1/25225-25351 39947:Oryza sativa
Japonica Group
Length = 127
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 actccctccgttccataatataagg 33
|||||||||||||||||||||||||
Sbjct: 6 actccctccgttccataatataagg 30
Score = 44.1 bits (22), Expect = 0.001
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 222 ccttatatcatggaacggagggagta 247
|||||||| |||||||||||||||||
Sbjct: 30 ccttatattatggaacggagggagta 5
>RF00906;MIR1122;AC084282.6/14827-14672 39947:Oryza sativa Japonica
Group
Length = 156
Score = 50.1 bits (25), Expect = 2e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 222 ccttatatcatggaacggagggagtatat 250
||||||||||||| |||||||||||||||
Sbjct: 127 ccttatatcatgggacggagggagtatat 155
>RF00906;MIR1122;AK248893.1/1282-1190 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 48.1 bits (24), Expect = 6e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 actccctccgttccataatataag 32
||||||||||||||||||||||||
Sbjct: 6 actccctccgttccataatataag 29
>RF00906;MIR1122;AAAA02007333.1/13137-13002 39946:Oryza sativa
Indica Group
Length = 136
Score = 48.1 bits (24), Expect = 6e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 9 actccctccgttccataatataag 32
||||||||||||||||||||||||
Sbjct: 131 actccctccgttccataatataag 108
>RF01058;MIR806;AACV01016618.1/3926-4166 39947:Oryza sativa
Japonica Group
Length = 241
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 7 acactccctccgttccataatataagg 33
||||||||||||| |||||||||||||
Sbjct: 1 acactccctccgtcccataatataagg 27
>RF00906;MIR1122;AP000364.1/54072-53981 39947:Oryza sativa Japonica
Group
Length = 92
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 222 ccttatatcatggaacggagggagtat 248
|||||||||||||||||||| ||||||
Sbjct: 30 ccttatatcatggaacggagagagtat 4
>RF00906;MIR1122;AACV01015419.1/9967-10122 39947:Oryza sativa
Japonica Group
Length = 156
Score = 44.1 bits (22), Expect = 0.001
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 222 ccttatatcatggaacggagggagta 247
||||||||||||| ||||||||||||
Sbjct: 30 ccttatatcatgggacggagggagta 5
>RF00906;MIR1122;AC215729.1/5950-6041 4537:Oryza punctata
Length = 92
Score = 44.1 bits (22), Expect = 0.001
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 222 ccttatatcatggaacggagggagtatatt 251
|||||||| |||| ||||||||||||||||
Sbjct: 30 ccttatattatgggacggagggagtatatt 1
>RF00906;MIR1122;AACV01013085.1/19238-19395 39947:Oryza sativa
Japonica Group
Length = 158
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 actccctccgttccataatata 30
||||||||||||||||||||||
Sbjct: 6 actccctccgttccataatata 27
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 9 actccctccgttccataatata 30
||||||||||||||||||||||
Sbjct: 153 actccctccgttccataatata 132
>RF00906;MIR1122;AAAA02017484.1/6201-6342 39946:Oryza sativa Indica
Group
Length = 142
Score = 44.1 bits (22), Expect = 0.001
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 222 ccttatatcatggaacggagggagtatatt 251
|||||||| |||| ||||||||||||||||
Sbjct: 113 ccttatattatgggacggagggagtatatt 142
>RF00906;MIR1122;AAAA02000094.1/16089-15933 39946:Oryza sativa
Indica Group
Length = 157
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 actccctccgttccataatata 30
||||||||||||||||||||||
Sbjct: 6 actccctccgttccataatata 27
>RF00906;MIR1122;AP008213.1/6090564-6090409 39947:Oryza sativa
Japonica Group
Length = 156
Score = 44.1 bits (22), Expect = 0.001
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 222 ccttatatcatggaacggagggagta 247
||||||||||||| ||||||||||||
Sbjct: 30 ccttatatcatgggacggagggagta 5
>RF00906;MIR1122;AC123518.2/65954-65790 39947:Oryza sativa
Japonica Group
Length = 165
Score = 44.1 bits (22), Expect = 0.001
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 4 tatacactccctccgttccataatataagg 33
|||| ||||||||||| |||||||||||||
Sbjct: 1 tatatactccctccgtcccataatataagg 30
>RF00906;MIR1122;AAAA02020362.1/853-722 39946:Oryza sativa Indica
Group
Length = 132
Score = 44.1 bits (22), Expect = 0.001
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 222 ccttatatcatggaacggagggagtatatt 251
|||||||| |||| ||||||||||||||||
Sbjct: 103 ccttatattatgggacggagggagtatatt 132
>RF00906;MIR1122;AP008211.1/23389262-23389121 39947:Oryza sativa
Japonica Group
Length = 142
Score = 44.1 bits (22), Expect = 0.001
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 222 ccttatatcatggaacggagggagtatatt 251
|||||||| |||| ||||||||||||||||
Sbjct: 113 ccttatattatgggacggagggagtatatt 142
