miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00645;MIR169_2;AM476671.2/16778-16661 29760:Vitis vinifera
Length = 118
Score = 58.0 bits (29), Expect = 5e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 31 agagtggaatgtagccaaggatgacttgc 59
|||||||||||||||||||||||||||||
Sbjct: 1 agagtggaatgtagccaaggatgacttgc 29
>RF00645;MIR169_2;ABXC01006862.1/83418-83293 4558:Sorghum bicolor
(sorghum)
Length = 126
Score = 50.1 bits (25), Expect = 1e-05
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 37 gaatgtagccaaggatgacttgccaggtatgtgcatg 73
||||| |||||||||||||||||| | ||||||||||
Sbjct: 7 gaatgcagccaaggatgacttgccggatatgtgcatg 43
>RF00645;MIR169_2;AARH01007603.1/209255-209144 3694:Populus
trichocarpa
Length = 112
Score = 44.1 bits (22), Expect = 7e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 31 agagtggaatgtagccaaggatgacttgcc 60
||||| ||||| ||||||||||||||||||
Sbjct: 1 agagtagaatgcagccaaggatgacttgcc 30
>RF00645;MIR169_2;AARH01002993.1/21348-21232 3694:Populus
trichocarpa
Length = 117
Score = 44.1 bits (22), Expect = 7e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 31 agagtggaatgtagccaaggatgacttgcc 60
||||| ||||| ||||||||||||||||||
Sbjct: 1 agagtcgaatgcagccaaggatgacttgcc 30
>RF00645;MIR169_2;CAAP02002239.1/50886-50767 29760:Vitis vinifera
Length = 120
Score = 44.1 bits (22), Expect = 7e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 31 agagtggaatgtagccaaggatgacttgcc 60
|||||||| || ||||||||||||||||||
Sbjct: 1 agagtggagtgcagccaaggatgacttgcc 30
>RF00645;MIR169_2;CAAP02002239.1/44264-44145 29760:Vitis vinifera
Length = 120
Score = 44.1 bits (22), Expect = 7e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 31 agagtggaatgtagccaaggatgacttgcc 60
|||||||| || ||||||||||||||||||
Sbjct: 1 agagtggagtgcagccaaggatgacttgcc 30
>RF00645;MIR169_2;ABXC01002876.1/68453-68594 4558:Sorghum bicolor
(sorghum)
Length = 142
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 39 atgtagccaaggatgacttgcc 60
||||||||||||||||||||||
Sbjct: 9 atgtagccaaggatgacttgcc 30
>RF00645;MIR169_2;AP005769.3/167010-166879 39947:Oryza sativa
Japonica Group
Length = 132
Score = 44.1 bits (22), Expect = 7e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 109 atccatgctgatatttcccggcaggttgttcttggcta 146
||||||||||| |||| |||||| ||||| ||||||||
Sbjct: 82 atccatgctgacattttccggcaagttgtccttggcta 119
