miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01241;SNORA81;AAGW01539458.1/1594-1417 9986:Oryctolagus cuniculus
(rabbit)
Length = 178
Score = 172 bits (87), Expect = 6e-43
Identities = 96/99 (96%)
Strand = Plus / Plus
Query: 3 accttcttgtataagcactgtgctaaaattgcagacactaggaccatgtcttggtttttg 62
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 accttcttgtataagcactgtgctaaaattgcagaaactaggaccatgtcttggtttttg 60
Query: 63 caataatgctagcagagtacacacaagaagaaaagtaac 101
||||||||||||||||||||||||||||||| ||||||
Sbjct: 61 taataatgctagcagagtacacacaagaagaagagtaac 99
>RF01241;SNORA81;AAHX01072068.1/2687-2507 10116:Rattus norvegicus
(Norway rat)
Length = 181
Score = 139 bits (70), Expect = 8e-33
Identities = 91/98 (92%)
Strand = Plus / Plus
Query: 3 accttcttgtataagcactgtgctaaaattgcagacactaggaccatgtcttggtttttg 62
||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 1 accttcttgtataagcactgtgctaaaattgcagaaactaggattatgtcttggtttttg 60
Query: 63 caataatgctagcagagtacacacaagaagaaaagtaa 100
||||||||||||||| | ||||||||||||| |||||
Sbjct: 61 taataatgctagcagactgcacacaagaagaagagtaa 98
>RF01241;SNORA81;ABRQ01342483.1/710-887 9813:Procavia capensis (cape
rock hyrax)
Length = 178
Score = 121 bits (61), Expect = 2e-27
Identities = 91/101 (90%)
Strand = Plus / Plus
Query: 5 cttcttgtataagcactgtgctaaaattgcagacactaggaccatgtcttggtttttgca 64
||||||||||||||||||||||||||||||||| || ||||| |||| |||||||| |
Sbjct: 3 cttcttgtataagcactgtgctaaaattgcagaaacaaggactgtgtccaggtttttgta 62
Query: 65 ataatgctagcagagtacacacaagaagaaaagtaacagca 105
|| ||||||||||||||||||| |||||||||| |||||||
Sbjct: 63 atgatgctagcagagtacacacgagaagaaaaggaacagca 103
>RF01241;SNORA81;AAHX01072069.1/13706-13585 10116:Rattus
norvegicus (Norway rat)
Length = 122
Score = 117 bits (59), Expect = 3e-26
Identities = 74/79 (93%)
Strand = Plus / Plus
Query: 3 accttcttgtataagcactgtgctaaaattgcagacactaggaccatgtcttggtttttg 62
||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 1 accttcttgtataagcactgtgctaaaattgcagaaactaggattatgtcttggtttttg 60
Query: 63 caataatgctagcagagta 81
||||||||||| ||||||
Sbjct: 61 taataatgctagtagagta 79
>RF01241;SNORA81;AAIY01159036.1/14517-14337 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 181
Score = 113 bits (57), Expect = 5e-25
Identities = 81/89 (91%)
Strand = Plus / Plus
Query: 4 ccttcttgtataagcactgtgctaaaattgcagacactaggaccatgtcttggtttttgc 63
||||||||||||||||||||||||||||| |||| ||| || | ||||||||||||||
Sbjct: 2 ccttcttgtataagcactgtgctaaaattacagaaactggggcactgtcttggtttttgt 61
Query: 64 aataatgctagcagagtacacacaagaag 92
|||||||||||||||||||||||| ||||
Sbjct: 62 aataatgctagcagagtacacacaggaag 90
>RF01241;SNORA81;AANN01199082.1/1089-1266 9365:Erinaceus europaeus
(western European hedgehog)
Length = 178
Score = 111 bits (56), Expect = 2e-24
Identities = 86/96 (89%)
Strand = Plus / Plus
Query: 4 ccttcttgtataagcactgtgctaaaattgcagacactaggaccatgtcttggtttttgc 63
||||||||||||||||||||||||||||| |||| ||| || ||||||||||||
Sbjct: 2 ccttcttgtataagcactgtgctaaaattacagaaactttgatttcatcttggtttttgt 61
Query: 64 aataatgctagcagagtacacacaagaagaaaagta 99
||||||||||||||||||||||||||||||||||||
Sbjct: 62 aataatgctagcagagtacacacaagaagaaaagta 97
>RF01241;SNORA81;AANU01221592.1/565-734 9544:Macaca mulatta
(rhesus monkey)
Length = 170
Score = 109 bits (55), Expect = 7e-24
Identities = 79/87 (90%)
Strand = Plus / Plus
Query: 5 cttcttgtataagcactgtgctaaaattgcagacactaggaccatgtcttggtttttgca 64
|||| |||||||||||||||||||||| ||||| ||||||||| | ||||||||||||
Sbjct: 3 cttcctgtataagcactgtgctaaaatcgcagaaactaggaccgtatcttggtttttgtg 62
Query: 65 ataatgctagcagagtacacacaagaa 91
|||||||||||||||||||| ||||||
Sbjct: 63 ataatgctagcagagtacactcaagaa 89
>RF01241;SNORA81;Z54797.1/15-169 9606:Homo sapiens (human)
Length = 155
Score = 95.6 bits (48), Expect = 1e-19
Identities = 72/80 (90%)
Strand = Plus / Plus
Query: 12 tataagcactgtgctaaaattgcagacactaggaccatgtcttggtttttgcaataatgc 71
||||||||||||||||||||||||| ||| ||||||| || || |||||| ||||||||
Sbjct: 12 tataagcactgtgctaaaattgcaggaactgggaccatatcctgatttttgtaataatgc 71
Query: 72 tagcagagtacacacaagaa 91
|||||||||||||||||||
Sbjct: 72 cagcagagtacacacaagaa 91
>RF01241;SNORA81;DJ347466.1/5398-5574 10090:Mus musculus (house
mouse)
Length = 177
Score = 95.6 bits (48), Expect = 1e-19
Identities = 72/80 (90%)
Strand = Plus / Plus
Query: 12 tataagcactgtgctaaaattgcagacactaggaccatgtcttggtttttgcaataatgc 71
||||||||||||||||||||||||| ||| ||||||| || || |||||| ||||||||
Sbjct: 12 tataagcactgtgctaaaattgcaggaactgggaccatatcctgatttttgtaataatgc 71
Query: 72 tagcagagtacacacaagaa 91
|||||||||||||||||||
Sbjct: 72 cagcagagtacacacaagaa 91
>RF01241;SNORA81;ABRT010418399.1/1178-1335 9478:Tarsius syrichta
(Philippine tarsier)
Length = 158
Score = 79.8 bits (40), Expect = 6e-15
Identities = 79/91 (86%), Gaps = 2/91 (2%)
Strand = Plus / Plus
Query: 13 ataagcactgtgct--aaaattgcagacactaggaccatgtcttggtttttgcaataatg 70
|||||||||||||| || |||||||| |||||| |||| | ||| |||||| ||||||
Sbjct: 11 ataagcactgtgctttaatattgcagaaactagggccatatattgatttttgtaataatc 70
Query: 71 ctagcagagtacacacaagaagaaaagtaac 101
|||||||||| || |||||||||||||||||
Sbjct: 71 ctagcagagtgcatacaagaagaaaagtaac 101
>RF01241;SNORA81;AAKN02012629.1/34252-34098 10141:Cavia porcellus
(domestic guinea pig)
Length = 155
Score = 79.8 bits (40), Expect = 6e-15
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 58 ttttgcaataatgctagcagagtacacacaagaagaaaagtaac 101
||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 33 ttttgtaataatgctagcagagtacacacaagaagaaaagtaac 76
>RF01241;SNORA81;ABRP01071426.1/11523-11348 132908:Pteropus vampyrus
(large flying fox)
Length = 176
Score = 77.8 bits (39), Expect = 3e-14
Identities = 69/79 (87%)
Strand = Plus / Plus
Query: 23 tgctaaaattgcagacactaggaccatgtcttggtttttgcaataatgctagcagagtac 82
|||||||| |||||| ||||||| || |||||||||||| | ||||| ||||||| ||
Sbjct: 21 tgctaaaactgcagaaactaggatcacatcttggtttttgtgaaaatgccagcagagcac 80
Query: 83 acacaagaagaaaagtaac 101
|||||||||||||||||||
Sbjct: 81 acacaagaagaaaagtaac 99
>RF01241;SNORA81;ABRN01129666.1/618-440 9739:Tursiops truncatus
(bottlenosed dolphin)
Length = 179
Score = 77.8 bits (39), Expect = 3e-14
Identities = 49/51 (96%), Gaps = 1/51 (1%)
Strand = Plus / Plus
Query: 51 tcttggtttttgcaataatgctagcagagtacacacaagaagaaaagtaac 101
|||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct: 48 tcttggtttttgtaataatgctagcagagtacacacaagaa-aaaagtaac 97
>RF01241;SNORA81;AAEX02021678.1/137430-137252 9615:Canis lupus
familiaris (dog)
Length = 179
Score = 77.8 bits (39), Expect = 3e-14
Identities = 72/83 (86%)
Strand = Plus / Plus
Query: 14 taagcactgtgctaaaattgcagacactaggaccatgtcttggtttttgcaataatgcta 73
||||| |||| ||||||||||||| |||| | |||||||| || |||| ||||| ||||
Sbjct: 12 taagctctgtactaaaattgcagaagctagtatcatgtcttagtatttgtaataaagcta 71
Query: 74 gcagagtacacacaagaagaaaa 96
|||||||| ||||||||||||||
Sbjct: 72 gcagagtaaacacaagaagaaaa 94
>RF01241;SNORA81;ABRO01162249.1/2240-2068 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 173
Score = 75.8 bits (38), Expect = 1e-13
Identities = 72/82 (87%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 18 cactgtgctaaaattgcagacactaggaccatgtcttggtttttgcaataatgctagcag 77
|||||||||||||| ||||| |||||| | ||||| ||||| || ||||||| ||||||
Sbjct: 14 cactgtgctaaaatcgcagaaactagggtcctgtct-ggtttctgtaataatgttagcag 72
Query: 78 agtacacacaagaagaaaagta 99
||||||||||||||| ||||||
Sbjct: 73 agtacacacaagaaggaaagta 94
>RF01241;SNORA81;AAIY01057702.1/1417-1239 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 179
Score = 71.9 bits (36), Expect = 2e-12
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 42 aggaccatgtcttggtttttgcaataatgctagcagagtacacacaagaagaaaagtaac 101
|||||| ||||||||||||| ||||||||||||||| |||| ||||||||||||||||
Sbjct: 41 aggaccttgtcttggtttttataataatgctagcagaagacacccaagaagaaaagtaac 100
>RF01241;SNORA81;AAPE01121920.1/849-996 59463:Myotis lucifugus
(little brown bat)
Length = 148
Score = 69.9 bits (35), Expect = 6e-12
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 67 aatgctagcagagtacacacaagaagaaaagtaac 101
|||||||||||||||||||||||||||||||||||
Sbjct: 35 aatgctagcagagtacacacaagaagaaaagtaac 69
>RF01241;SNORA81;AABR04130638.1/4039-3892 10116:Rattus norvegicus
(Norway rat)
Length = 148
Score = 69.9 bits (35), Expect = 6e-12
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 63 caataatgctagcagagtacacacaagaagaaaagtaac 101
|||||||||||||||||||||||||||||||| ||||||
Sbjct: 31 caataatgctagcagagtacacacaagaagaagagtaac 69
>RF01241;SNORA81;ABRO01243130.1/121-313 10020:Dipodomys ordii (Ord's
kangaroo rat)
Length = 193
Score = 69.9 bits (35), Expect = 6e-12
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 49 tgtcttggtttttgcaataatgctagcagagtacacacaagaagaaaagta 99
||||||||||| || |||||| |||||||||| ||||||||||||||||||
Sbjct: 62 tgtcttggtttctgtaataattctagcagagtccacacaagaagaaaagta 112
>RF01241;SNORA81;AAGW01302935.1/717-892 9986:Oryctolagus cuniculus
(rabbit)
Length = 176
Score = 69.9 bits (35), Expect = 6e-12
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 39 actaggaccatgtcttggtttttgcaataatgctagcagagtacacacaagaaga 93
|||||||||||| | ||||||||| || ||||||||||| |||||||||||||||
Sbjct: 39 actaggaccatgacgtggtttttgtaagaatgctagcagggtacacacaagaaga 93
>RF01241;SNORA81;AAFR03036229.1/2466-2648 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 183
Score = 63.9 bits (32), Expect = 4e-10
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 15 aagcactgtgctaaaattgcagacactaggaccatgtcttggtttttgcaataatgctag 74
||||||||||||||||||||| | | || | | ||| |||||| |||| |||||||||||
Sbjct: 15 aagcactgtgctaaaattgcaaaaattaaggcaatgccttggtctttgtaataatgctag 74
Query: 75 cagagtacacacaagaagaa 94
|| |||| | ||||||||||
Sbjct: 75 cacagtatatacaagaagaa 94
>RF01241;SNORA81;AAPE01157398.1/1049-859 59463:Myotis lucifugus
(little brown bat)
Length = 191
Score = 63.9 bits (32), Expect = 4e-10
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 57 tttttgcaataatgctagcagagtacacacaagaagaaaagtaa 100
|||||| ||||||| |||||| ||||||||||||||||||||||
Sbjct: 70 tttttgtaataatgttagcagggtacacacaagaagaaaagtaa 113
>RF01241;SNORA81;ACBE01562338.1/3687-3526 9685:Felis catus
(domestic cat)
Length = 162
Score = 63.9 bits (32), Expect = 4e-10
Identities = 65/76 (85%)
Strand = Plus / Plus
Query: 12 tataagcactgtgctaaaattgcagacactaggaccatgtcttggtttttgcaataatgc 71
||||||||||||| |||| ||| || ||||||| || |||||||||||| |||||||
Sbjct: 12 tataagcactgtgtcaaaactgcggaaactaggatcacatcttggtttttgtaataatgt 71
Query: 72 tagcagagtacacaca 87
| ||||||||||||||
Sbjct: 72 tggcagagtacacaca 87
>RF01241;SNORA81;ABRO01143171.1/2560-2664 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 105
Score = 63.9 bits (32), Expect = 4e-10
Identities = 62/72 (86%)
Strand = Plus / Plus
Query: 3 accttcttgtataagcactgtgctaaaattgcagacactaggaccatgtcttggtttttg 62
||||||||||||||||||||||||| ||||||||| ||| | | | ||| ||||||| ||
Sbjct: 1 accttcttgtataagcactgtgctataattgcagaaacttgaatcctgttttggtttctg 60
Query: 63 caataatgctag 74
| |||||||||
Sbjct: 61 tagtaatgctag 72
>RF01241;SNORA81;ABRR01125721.1/586-406 30538:Lama pacos (alpaca)
Length = 181
Score = 61.9 bits (31), Expect = 2e-09
Identities = 79/95 (83%)
Strand = Plus / Plus
Query: 6 ttcttgtataagcactgtgctaaaattgcagacactaggaccatgtcttggtttttgcaa 65
||||||||||||||| ||||| ||| |||| | |||||| ||| |||||| || |
Sbjct: 4 ttcttgtataagcacggtgctgaaactgcacaaactagggccacatcttggacttcatag 63
Query: 66 taatgctagcagagtacacacaagaagaaaagtaa 100
||||||| ||||||||||||||||||||| |||||
Sbjct: 64 taatgctggcagagtacacacaagaagaagagtaa 98
>RF01241;SNORA81;ABRP01310020.1/1682-1856 132908:Pteropus vampyrus
(large flying fox)
Length = 175
Score = 56.0 bits (28), Expect = 9e-08
Identities = 67/80 (83%)
Strand = Plus / Plus
Query: 14 taagcactgtgctaaaattgcagacactaggaccatgtcttggtttttgcaataatgcta 73
||||| || |||| |||| ||||| ||||| | ||||||| || |||| ||||| ||||
Sbjct: 9 taagctctatgcttaaatggcagaaactagtatcatgtctaagtatttgtaataaagcta 68
Query: 74 gcagagtacacacaagaaga 93
|||||||| |||||||||||
Sbjct: 69 gcagagtagacacaagaaga 88
>RF01241;SNORA81;AAQQ01259603.1/895-1007 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 113
Score = 54.0 bits (27), Expect = 4e-07
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 25 ctaaaattgcagacactaggaccatgtcttggtttttgcaataatgctagcagagtacac 84
|||||||| |||| ||||| | ||||||||||| |||| ||||| || ||||||||| |
Sbjct: 20 ctaaaatttcagaaactagtatcatgtcttggtatttgaaataaagcgagcagagtaagc 79
Query: 85 acaagaa 91
|||||||
Sbjct: 80 acaagaa 86
>RF01241;SNORA81;CABD01130315.1/3046-3243 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 198
Score = 52.0 bits (26), Expect = 1e-06
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 3 accttcttgtataagcactgtgctaaaattgcagacactaggaccatgtctt 54
|||||||||| ||||| |||| ||||||||||||| ||||| | | ||||||
Sbjct: 1 accttcttgtttaagctctgtactaaaattgcagaaactagtatcrtgtctt 52
>RF01241;SNORA81;ABRR01115083.1/2601-2768 30538:Lama pacos
(alpaca)
Length = 168
Score = 50.1 bits (25), Expect = 6e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 3 accttcttgtataagcactgtgctaaaattgcagacactag 43
|||||||| | ||||| |||||||||||||||||| |||||
Sbjct: 1 accttcttatttaagctctgtgctaaaattgcagaaactag 41
>RF01241;SNORA81;AAEX02021693.1/134623-134803 9615:Canis lupus
familiaris (dog)
Length = 181
Score = 50.1 bits (25), Expect = 6e-06
Identities = 77/93 (82%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 9 ttgtataagcactgtgctaaaattgcagacactaggaccatgtcttggtttttgcaataa 68
||||||||||| || |||||||| ||||| || ||| ||| |||||||| || ||| |
Sbjct: 9 ttgtataagcattgcgctaaaatcgcagaaaccgggatcataccttggtttctgtaatga 68
Query: 69 tgctagcagagtacacacaagaagaaaagtaac 101
|| ||||||| || ||| |||||||||||||||
Sbjct: 69 tgttagcagacta-acataagaagaaaagtaac 100
>RF01241;SNORA81;ABGA01131984.1/1160-1337 9601:Pongo abelii
(Sumatran orangutan)
Length = 178
Score = 48.1 bits (24), Expect = 2e-05
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 3 accttcttgtataagcactgtgctaaaattgcagacactaggaccatgtctt 54
|||| ||||| ||||| |||| ||||||||||||| ||||| | ||||||||
Sbjct: 1 acctccttgtttaagctctgtactaaaattgcagaaactagtatcatgtctt 52
>RF01241;SNORA81;ABQF01023320.1/16627-16447 59729:Taeniopygia
guttata
Length = 181
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 3 accttcttgtataagcactgtgctaaaattgc 34
|||||||||| ||||||||||||||||||||
Sbjct: 1 accttcttgttaaagcactgtgctaaaattgc 32
>RF01241;SNORA81;AAWZ01017058.1/49647-49469 28377:Anolis
carolinensis (green anole)
Length = 179
Score = 46.1 bits (23), Expect = 9e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 66 taatgctagcagagtacacacaagaagaaaagtaa 100
||||||||||| |||||||| |||||||||||||
Sbjct: 64 taatgctagcatggtacacacgagaagaaaagtaa 98
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 5 cttcttgtataagcactgtgctaaaa 30
||||||||| ||||||||||||||||
Sbjct: 3 cttcttgtacaagcactgtgctaaaa 28
>RF01241;SNORA81;AADN02020726.1/3578-3758 9031:Gallus gallus
(chicken)
Length = 181
Score = 46.1 bits (23), Expect = 9e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 3 accttcttgtataagcactgtgctaaaattgcaga 37
|||||||||| |||||||||||||||||| ||||
Sbjct: 1 accttcttgtcaaagcactgtgctaaaattacaga 35
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 64 aataatgctagcagagtacacacaagaagaa 94
||||||||||| ||||||||| |||||||||
Sbjct: 62 aataatgctagtagagtacacgcaagaagaa 92
>RF01241;SNORA81;AANU01300260.1/34055-34243 9544:Macaca mulatta
(rhesus monkey)
Length = 189
Score = 44.1 bits (22), Expect = 4e-04
Identities = 76/94 (80%)
Strand = Plus / Plus
Query: 3 accttcttgtataagcactgtgctaaaattgcagacactaggaccatgtcttggtttttg 62
|||||||||| ||||| || | |||||||| |||| ||||| | |||||||| | ||||
Sbjct: 1 accttcttgtttaagctctctactaaaattccagaaactagtatcatgtcttagcatttg 60
Query: 63 caataatgctagcagagtacacacaagaagaaaa 96
|||| |||| ||||| | || |||||||||||
Sbjct: 61 tcataaagctatcagagaaaacccaagaagaaaa 94
