miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00017;Metazoa_SRP;AACZ02080413.1/42671-42952 9598:Pan troglodytes
(chimpanzee)
Length = 282
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 49 attgtgccactgtattccagcctaggcaacaa 80
|||||||||||| |||||||||| ||||||||
Sbjct: 233 attgtgccactgcattccagcctgggcaacaa 264
>RF00017;Metazoa_SRP;AADC01128110.1/20452-20169 9606:Homo sapiens
(human)
Length = 284
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 49 attgtgccactgtattccagcctaggcaacaa 80
|||||||||||||| |||||||| ||||||||
Sbjct: 235 attgtgccactgtactccagccttggcaacaa 266
>RF00017;Metazoa_SRP;ABGA01292638.1/11639-11354 9601:Pongo abelii
(Sumatran orangutan)
Length = 286
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 65 ccagcctaggcaacaaaatgaaatcctgtct 95
||||||| ||||||||||||| |||||||||
Sbjct: 253 ccagcctgggcaacaaaatgagatcctgtct 283
>RF00017;Metazoa_SRP;AADA01042910.1/14375-14659 9598:Pan troglodytes
(chimpanzee)
Length = 285
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 49 attgtgccactgtattccagcctaggcaaca 79
|||||||||||||| |||||||| |||||||
Sbjct: 99 attgtgccactgtactccagcctgggcaaca 129
>RF00017;Metazoa_SRP;CABD01034185.1/2201-1926 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 276
Score = 46.1 bits (23), Expect = 8e-05
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 13 cttgagcctggaagctggagcctgcagtgaactatcattgtgccactgtattccagccta 72
||||||||||| || ||||| ||||||||| || || |||||| |||| |||||||||
Sbjct: 63 cttgagcctgggaggtggaggctgcagtgagctgagatcgtgccattgtactccagccta 122
Query: 73 ggc 75
|||
Sbjct: 123 ggc 125
>RF00017;Metazoa_SRP;AAQR01490893.1/2015-2288 30611:Otolemur
garnettii (small-eared galago)
Length = 274
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 54 gccactgtattccagcctaggcaaca 79
||||||||| ||||||||||||||||
Sbjct: 230 gccactgtactccagcctaggcaaca 255
>RF00017;Metazoa_SRP;ABDC01328995.1/2532-2220 30608:Microcebus
murinus (gray mouse lemur)
Length = 313
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 54 gccactgtattccagcctaggcaaca 79
|||||||||||||||||| |||||||
Sbjct: 269 gccactgtattccagcctgggcaaca 294
>RF00017;Metazoa_SRP;ABDC01446160.1/1732-2040 30608:Microcebus
murinus (gray mouse lemur)
Length = 309
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 54 gccactgtattccagcctaggcaaca 79
||||||| ||||||||||||||||||
Sbjct: 265 gccactgcattccagcctaggcaaca 290
>RF00017;Metazoa_SRP;AACZ02128424.1/3207-3475 9598:Pan troglodytes
(chimpanzee)
Length = 269
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 gtgggaggattgcttgagcctggaag 26
||||||| ||||||||||||||||||
Sbjct: 51 gtgggagaattgcttgagcctggaag 76
>RF00017;Metazoa_SRP;AP003174.2/155271-155539 9606:Homo sapiens
(human)
Length = 269
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 gtgggaggattgcttgagcctggaag 26
||||||| ||||||||||||||||||
Sbjct: 51 gtgggagaattgcttgagcctggaag 76
>RF00017;Metazoa_SRP;AADB02010987.1/226976-226677 9606:Homo sapiens
(human)
Length = 300
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 54 gccactgtattccagcctaggcaaca 79
|||||||||||||||||| |||||||
Sbjct: 256 gccactgtattccagcctgggcaaca 281
>RF00017;Metazoa_SRP;CABD01363318.2/544-264 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 281
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 54 gccactgtattccagcctaggcaaca 79
|||||||||||||||||| |||||||
Sbjct: 237 gccactgtattccagcctgggcaaca 262
>RF00017;Metazoa_SRP;CABD01026495.1/4396-4671 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 276
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gtgggaggattgcttgagcctg 22
||||||||||||||||||||||
Sbjct: 51 gtgggaggattgcttgagcctg 72
>RF00017;Metazoa_SRP;AANU01169235.1/939-688 9544:Macaca mulatta
(rhesus monkey)
Length = 252
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gtgggaggattgcttgagcctg 22
||||||||||||||||||||||
Sbjct: 51 gtgggaggattgcttgagcctg 72
>RF00017;Metazoa_SRP;AANU01248061.1/85213-84931 9544:Macaca mulatta
(rhesus monkey)
Length = 283
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 52 gtgccactgtattccagcctaggcaacaaaatga 85
||||||||| | |||||||| |||||||||||||
Sbjct: 237 gtgccactgcactccagcctgggcaacaaaatga 270
>RF00017;Metazoa_SRP;AANU01171337.1/75216-74917 9544:Macaca mulatta
(rhesus monkey)
Length = 300
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 54 gccactgtattccagcctaggcaaca 79
|||||||||||||||||| |||||||
Sbjct: 256 gccactgtattccagcctgggcaaca 281
>RF00017;Metazoa_SRP;AANU01096689.1/161-444 9544:Macaca mulatta
(rhesus monkey)
Length = 284
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 54 gccactgtattccagcctaggcaaca 79
|||||||||||||||||| |||||||
Sbjct: 240 gccactgtattccagcctgggcaaca 265
