miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;FJ234838.1/106075-106199 29664:Brachypodium
sylvaticum
Length = 125
Score = 103 bits (52), Expect = 6e-22
Identities = 78/84 (92%), Gaps = 2/84 (2%)
Strand = Plus / Plus
Query: 23 tactccctccgtcccatatttaagtgactcaaatttgcccaaatatggatgtatctattc 82
|||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
Sbjct: 5 tactccctccgtcccatatt-aagtgactcaaatttgtccaaatatggatgtatctatgc 63
Query: 83 ccaaaaagcgtcta-atacatgta 105
|||||||||||| |||||||||
Sbjct: 64 ttaaaaagcgtctagatacatgta 87
>RF00906;MIR1122;EF059989.1/56206-56082 29664:Brachypodium
sylvaticum
Length = 125
Score = 87.7 bits (44), Expect = 4e-17
Identities = 76/84 (90%), Gaps = 2/84 (2%)
Strand = Plus / Minus
Query: 23 tactccctccgtcccatatttaagtgactcaaatttgcccaaatatggatgtatctattc 82
||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||
Sbjct: 121 tactccctccgtctcatatt-aagtgactcaaatttgtccaaatatggatgtatctatgt 63
Query: 83 ccaaaaagcgtcta-atacatgta 105
| |||||| ||||| |||||||||
Sbjct: 62 ctaaaaagtgtctagatacatgta 39
>RF00906;MIR1122;EU730895.1/43836-43713 15368:Brachypodium
distachyon
Length = 124
Score = 81.8 bits (41), Expect = 2e-15
Identities = 60/65 (92%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 42 ttaagtgactcaaatttgcccaaatatggatgtatctattcccaaaaagcgtcta-atac 100
||||||| ||||||||||||||||||||||||||||||| || ||||||| |||| ||||
Sbjct: 22 ttaagtgtctcaaatttgcccaaatatggatgtatctatacctaaaaagcatctagatac 81
Query: 101 atgta 105
|||||
Sbjct: 82 atgta 86
>RF00906;MIR1122;EF059989.1/55128-55252 29664:Brachypodium
sylvaticum
Length = 125
Score = 79.8 bits (40), Expect = 9e-15
Identities = 56/60 (93%), Gaps = 1/60 (1%)
Strand = Plus / Minus
Query: 47 tgactcaaatttgcccaaatatggatgtatctattcccaaaaagcgtcta-atacatgta 105
|||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||
Sbjct: 98 tgactcaaatttgcccaaatatggatatatctattcttaaaaagcgtctagatacatgta 39
>RF00906;MIR1122;EF059989.1/24895-24770 29664:Brachypodium
sylvaticum
Length = 126
Score = 75.8 bits (38), Expect = 1e-13
Identities = 54/58 (93%), Gaps = 1/58 (1%)
Strand = Plus / Minus
Query: 23 tactccctccgtcccatatttaagtgactcaaatttgcccaaatatggatgtatctat 80
|||||||||||||||||||| |||||||||||||||| | ||||||||| ||||||||
Sbjct: 122 tactccctccgtcccatatt-aagtgactcaaatttgtctaaatatggacgtatctat 66
>RF00906;MIR1122;EU730902.1/127235-127359 15368:Brachypodium
distachyon
Length = 125
Score = 73.8 bits (37), Expect = 6e-13
Identities = 53/57 (92%), Gaps = 1/57 (1%)
Strand = Plus / Minus
Query: 50 ctcaaatttgcccaaatatggatgtatctattcccaaaaagcgtcta-atacatgta 105
|||||||||||||||| |||||||||||||||| |||||||||||| |||||||||
Sbjct: 95 ctcaaatttgcccaaaattggatgtatctattcctaaaaagcgtctagatacatgta 39
>RF00906;MIR1122;EF059989.1/222136-222013 29664:Brachypodium
sylvaticum
Length = 124
Score = 73.8 bits (37), Expect = 6e-13
Identities = 53/57 (92%), Gaps = 1/57 (1%)
Strand = Plus / Minus
Query: 50 ctcaaatttgcccaaatatggatgtatctattcccaaaaagcgtcta-atacatgta 105
||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||
Sbjct: 95 ctcaaatttgcccaaatatggatgtatctattcttaaaacgcgtctagatacatgta 39
>RF00906;MIR1122;EU730901.1/161594-161470 15368:Brachypodium
distachyon
Length = 125
Score = 73.8 bits (37), Expect = 6e-13
Identities = 53/57 (92%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 50 ctcaaatttgcccaaatatggatgtatctattcccaaaaagcgtcta-atacatgta 105
|||||||||||||| |||||||||||||||| || |||||||||||| |||||||||
Sbjct: 31 ctcaaatttgcccagatatggatgtatctatgcctaaaaagcgtctagatacatgta 87
>RF00906;MIR1122;EF059989.1/365637-365513 29664:Brachypodium
sylvaticum
Length = 125
Score = 71.9 bits (36), Expect = 2e-12
Identities = 61/68 (89%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 22 gtactccctccgtcccatatttaagtgactcaaatttgcccaaatatggatgtatctatt 81
||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 4 gtactccctccgtcctatatt-aagtgactcaaatttaatcaaatatggatgtatctatg 62
Query: 82 cccaaaaa 89
|| |||||
Sbjct: 63 cctaaaaa 70
>RF00906;MIR1122;EU730901.1/58586-58463 15368:Brachypodium
distachyon
Length = 124
Score = 67.9 bits (34), Expect = 3e-11
Identities = 50/54 (92%), Gaps = 1/54 (1%)
Strand = Plus / Plus
Query: 23 tactccctccgtcccatatttaagtgactcaaatttgcccaaatatggatgtat 76
||||| |||||||||||||| |||||||||||||||| ||| ||||||||||||
Sbjct: 5 tactctctccgtcccatatt-aagtgactcaaatttgtccagatatggatgtat 57
>RF00906;MIR1122;EU730900.1/55128-55253 15368:Brachypodium
distachyon
Length = 126
Score = 67.9 bits (34), Expect = 3e-11
Identities = 53/58 (91%), Gaps = 1/58 (1%)
Strand = Plus / Minus
Query: 23 tactccctccgtcccatatttaagtgactcaaatttgcccaaatatggatgtatctat 80
|||||||||||||||||||| |||||||||||||||| | ||| ||||| ||||||||
Sbjct: 122 tactccctccgtcccatatt-aagtgactcaaatttgtctaaaaatggacgtatctat 66
>RF00906;MIR1122;EU730900.1/18513-18389 15368:Brachypodium
distachyon
Length = 125
Score = 65.9 bits (33), Expect = 1e-10
Identities = 52/57 (91%), Gaps = 1/57 (1%)
Strand = Plus / Minus
Query: 50 ctcaaatttgcccaaatatggatgtatctattcccaaaaagcgtcta-atacatgta 105
||||||||| ||||||||||||||||||||| || ||||||||| || |||||||||
Sbjct: 95 ctcaaattttcccaaatatggatgtatctatgcctaaaaagcgtttagatacatgta 39
>RF00906;MIR1122;EU730902.1/94507-94383 15368:Brachypodium
distachyon
Length = 125
Score = 63.9 bits (32), Expect = 5e-10
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 50 ctcaaatttgcccaaatatggatgtatctattcccaaaaagcgt 93
|||||||||||||||| ||||||||||||||||| |||| ||||
Sbjct: 31 ctcaaatttgcccaaaaatggatgtatctattcctaaaaggcgt 74
>RF00906;MIR1122;EU730899.1/99199-99323 15368:Brachypodium
distachyon
Length = 125
Score = 60.0 bits (30), Expect = 8e-09
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 50 ctcaaatttgcccaaatatggatgtatctattcc 83
|||||||||||||||| |||||||||||||||||
Sbjct: 95 ctcaaatttgcccaaaaatggatgtatctattcc 62
>RF00906;MIR1122;EU730902.1/55282-55158 15368:Brachypodium
distachyon
Length = 125
Score = 58.0 bits (29), Expect = 3e-08
Identities = 51/57 (89%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 50 ctcaaatttgcccaaatatggatgtatctattcccaaaaagcgtcta-atacatgta 105
||||||||||| |||| ||||||||||||||| | |||| ||||||| |||||||||
Sbjct: 31 ctcaaatttgctcaaagatggatgtatctatttctaaaatgcgtctagatacatgta 87
>RF00906;MIR1122;EU730899.1/90906-91030 15368:Brachypodium
distachyon
Length = 125
Score = 58.0 bits (29), Expect = 3e-08
Identities = 51/57 (89%), Gaps = 1/57 (1%)
Strand = Plus / Minus
Query: 50 ctcaaatttgcccaaatatggatgtatctattcccaaaaagcgtcta-atacatgta 105
|||||||||| ||||| ||| ||||||||||||| |||||| ||||| |||||||||
Sbjct: 95 ctcaaatttgaccaaaaatgaatgtatctattcctaaaaagtgtctagatacatgta 39
>RF00906;MIR1122;EF059989.1/159537-159414 29664:Brachypodium
sylvaticum
Length = 124
Score = 56.0 bits (28), Expect = 1e-07
Identities = 73/84 (86%), Gaps = 3/84 (3%)
Strand = Plus / Plus
Query: 23 tactccctccgtcccatatttaagtgactcaaatttgcccaaatatggatgtatctattc 82
||||||||||||| |||| |||||||| ||||||| | ||||||||| |||||||| |
Sbjct: 5 tactccctccgtctcata-ttaagtgattcaaattcgtccaaatatgattgtatcta-ta 62
Query: 83 ccaaaaagcgtcta-atacatgta 105
||||||||||||| |||||||||
Sbjct: 63 tcaaaaagcgtctagatacatgta 86
>RF00906;MIR1122;EU730898.1/63863-63739 15368:Brachypodium
distachyon
Length = 125
Score = 54.0 bits (27), Expect = 5e-07
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 50 ctcaaatttgcccaaatatggatgtatctattcccaaaaagcgtcta 96
|||||||||||||||| || ||||||||||| | ||||||||||||
Sbjct: 95 ctcaaatttgcccaaaattgaatgtatctattactaaaaagcgtcta 49
>RF00906;MIR1122;EU730901.1/108914-109038 15368:Brachypodium
distachyon
Length = 125
Score = 50.1 bits (25), Expect = 8e-06
Identities = 50/57 (87%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 50 ctcaaatttgcccaaatatggatgtatctattcccaaaaagcgtcta-atacatgta 105
|||||| |||| |||| |||||||||||||||| |||||| ||||| |||||||||
Sbjct: 31 ctcaaagttgctcaaaaatggatgtatctattcataaaaagtgtctagatacatgta 87
>RF00906;MIR1122;EF059989.1/67137-67261 29664:Brachypodium
sylvaticum
Length = 125
Score = 50.1 bits (25), Expect = 8e-06
Identities = 50/57 (87%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 50 ctcaaatttgcccaaatatggatgtatctattcccaaaaagcgtcta-atacatgta 105
|||||| |||||||||||||||||||| ||| | ||||||||| || |||||||||
Sbjct: 31 ctcaaaattgcccaaatatggatgtatatatgcgtaaaaagcgtttagatacatgta 87
>RF00906;MIR1122;EU730898.1/54746-54622 15368:Brachypodium
distachyon
Length = 125
Score = 50.1 bits (25), Expect = 8e-06
Identities = 50/57 (87%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 50 ctcaaatttgcccaaatatggatgtatctattcccaaaaagcgtcta-atacatgta 105
||||||||||| |||| || |||||||||||| | |||||| ||||| |||||||||
Sbjct: 31 ctcaaatttgctcaaaaatagatgtatctatttctaaaaagtgtctagatacatgta 87
>RF00906;MIR1122;EU730902.1/42384-42258 15368:Brachypodium
distachyon
Length = 127
Score = 48.1 bits (24), Expect = 3e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 50 ctcaaatttgcccaaatatggatgtatctattcccaaaaa 89
|||||||| |||||| ||||||||||||||||| |||||
Sbjct: 31 ctcaaattaacccaaaaatggatgtatctattcctaaaaa 70
>RF00906;MIR1122;EF059989.1/52700-52824 29664:Brachypodium
sylvaticum
Length = 125
Score = 48.1 bits (24), Expect = 3e-05
Identities = 71/84 (84%), Gaps = 2/84 (2%)
Strand = Plus / Minus
Query: 23 tactccctccgtcccatatttaagtgactcaaatttgcccaaatatggatgtatctattc 82
||||||||||| |||||||| | || |||||||||||||||||| | ||| ||||||
Sbjct: 121 tactccctccgacccatatt-acttgtctcaaatttgcccaaatacgaatgcatctatgt 63
Query: 83 ccaaaaagcgtcta-atacatgta 105
|||||||||||| |||||||||
Sbjct: 62 ttaaaaagcgtctagatacatgta 39
>RF00906;MIR1122;AB239678.1/2131-2247 52163:Triticum monococcum
subsp. aegilopoides
Length = 117
Score = 46.1 bits (23), Expect = 1e-04
Identities = 33/35 (94%), Gaps = 1/35 (2%)
Strand = Plus / Minus
Query: 20 tagtactccctccgtcccatatttaagtgactcaa 54
||||||||||||||||||| | |||||||||||||
Sbjct: 116 tagtactccctccgtccca-aattaagtgactcaa 83
>RF00906;MIR1122;EU730901.1/65072-65195 15368:Brachypodium
distachyon
Length = 124
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 50 ctcaaatttgcccaaatatggatgtatctat 80
||||||||||||||||| ||||||||||||
Sbjct: 94 ctcaaatttgcccaaatgcggatgtatctat 64
>RF00906;MIR1122;EF059989.1/352416-352302 29664:Brachypodium
sylvaticum
Length = 115
Score = 46.1 bits (23), Expect = 1e-04
Identities = 42/47 (89%), Gaps = 1/47 (2%)
Strand = Plus / Plus
Query: 60 cccaaatatggatgtatctattcccaaaaagcgtcta-atacatgta 105
||||||||||||||||||||| | ||||| |||||| |||||||||
Sbjct: 31 cccaaatatggatgtatctatgcataaaaaacgtctagatacatgta 77
>RF00906;MIR1122;CT009735.1/55205-55297 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 104 tatgggacggagggagtacaac 125
||||||||||||||||||||||
Sbjct: 72 tatgggacggagggagtacaac 93
>RF00906;MIR1122;FJ477093.1/40908-41001 4513:Hordeum vulgare
Length = 94
Score = 44.1 bits (22), Expect = 5e-04
Identities = 32/34 (94%), Gaps = 1/34 (2%)
Strand = Plus / Minus
Query: 21 agtactccctccgtcccatatttaagtgactcaa 54
|||||||||||||||||| | |||||||||||||
Sbjct: 92 agtactccctccgtccca-aattaagtgactcaa 60
>RF00906;MIR1122;AK248893.1/1282-1190 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 19 atagtactccctccgtcccata 40
||||||||||||||||||||||
Sbjct: 93 atagtactccctccgtcccata 72
>RF00906;MIR1122;EU730894.1/127135-127259 15368:Brachypodium
distachyon
Length = 125
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 50 ctcaaatttgcccaaatatggatgtatcta 79
|||||||||||||||||| | |||||||||
Sbjct: 95 ctcaaatttgcccaaatacgaatgtatcta 66
