miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00920;MIR444;BT038959.1/401-528 4577:Zea mays
Length = 128
Score = 182 bits (92), Expect = 8e-46
Identities = 119/128 (92%)
Strand = Plus / Plus
Query: 6 tgcaaggggtggtgacaaacttgaggcagcaactgcatatcttgcaagaaaattgggttt 65
||||||||| |||||| | || |||||||||||||||||||||||||||||||||| |||
Sbjct: 1 tgcaaggggcggtgacgagctagaggcagcaactgcatatcttgcaagaaaattggtttt 60
Query: 66 cagagcataccgatgattttcttgcaagttgtgcagttgttgtctcaagcttgctgcctc 125
| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cgaaccataccgataattttcttgcaagttgtgcagttgttgtctcaagcttgctgcctc 120
Query: 126 cctttgcc 133
||||||||
Sbjct: 121 cctttgcc 128
>RF00920;MIR444;AK066992.1/189-316 39947:Oryza sativa Japonica Group
Length = 128
Score = 147 bits (74), Expect = 4e-35
Identities = 95/102 (93%)
Strand = Plus / Plus
Query: 32 cagcaactgcatatcttgcaagaaaattgggtttcagagcataccgatgattttcttgca 91
||||||||||||||||||||||||||| || ||| | |||||||||||||||||||||
Sbjct: 27 cagcaactgcatatcttgcaagaaaatcggttttatggccataccgatgattttcttgca 86
Query: 92 agttgtgcagttgttgtctcaagcttgctgcctccctttgcc 133
|| |||||||||||||||||||||||||||||||||||||||
Sbjct: 87 agctgtgcagttgttgtctcaagcttgctgcctccctttgcc 128
Score = 54.0 bits (27), Expect = 5e-07
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 80 gattttcttgcaagttgtgcagttgttgtctcaagcttgctgcctcc 126
|||||||||||||| | |||||||| |||||| ||||||| ||||||
Sbjct: 54 gattttcttgcaagatatgcagttgctgtctctagcttgccgcctcc 8
>RF00920;MIR444;BT065873.1/353-482 4577:Zea mays
Length = 130
Score = 121 bits (61), Expect = 3e-27
Identities = 61/61 (100%)
Strand = Plus / Plus
Query: 73 taccgatgattttcttgcaagttgtgcagttgttgtctcaagcttgctgcctccctttgc 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 taccgatgattttcttgcaagttgtgcagttgttgtctcaagcttgctgcctccctttgc 129
Query: 133 c 133
|
Sbjct: 130 c 130
Score = 44.1 bits (22), Expect = 5e-04
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 82 ttttcttgcaagttgtgcagttgttgtctcaagcttgctgcc 123
|||||||||||| | |||||||| || ||| |||||||||||
Sbjct: 52 ttttcttgcaaggtatgcagttgctgcctctagcttgctgcc 11
>RF00920;MIR444;EU947901.1/68-234 4577:Zea mays
Length = 167
Score = 93.7 bits (47), Expect = 6e-19
Identities = 50/51 (98%)
Strand = Plus / Plus
Query: 83 tttcttgcaagttgtgcagttgttgtctcaagcttgctgcctccctttgcc 133
||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 117 tttcttgcaagttgtgcagttgttgcctcaagcttgctgcctccctttgcc 167
>RF00920;MIR444;CU406550.1/236-400 4529:Oryza rufipogon
Length = 165
Score = 81.8 bits (41), Expect = 2e-15
Identities = 47/49 (95%)
Strand = Plus / Plus
Query: 78 atgattttcttgcaagttgtgcagttgttgtctcaagcttgctgcctcc 126
|||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 110 atgactttcttgcaagttgtgcagttgttgcctcaagcttgctgcctcc 158
>RF00920;MIR444;AK063114.1/148-276 39947:Oryza sativa Japonica Group
Length = 129
Score = 79.8 bits (40), Expect = 9e-15
Identities = 52/56 (92%)
Strand = Plus / Plus
Query: 71 cataccgatgattttcttgcaagttgtgcagttgttgtctcaagcttgctgcctcc 126
|||||||||||| |||||||||||| |||||||| || ||||||||||||||||||
Sbjct: 67 cataccgatgatattcttgcaagttatgcagttgctgcctcaagcttgctgcctcc 122
Score = 54.0 bits (27), Expect = 5e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 25 cttgaggcagcaactgcatatcttgcaagaa 55
|||||||||||||||||||| ||||||||||
Sbjct: 110 cttgaggcagcaactgcataacttgcaagaa 80
>RF00920;MIR444;AK249841.1/242-414 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 173
Score = 77.8 bits (39), Expect = 3e-14
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 83 tttcttgcaagttgtgcagttgttgtctcaagcttgctgcctccctttgcc 133
|||||||||||| ||||||||| || |||||||||||||||||||||||||
Sbjct: 123 tttcttgcaagtcgtgcagttgctgcctcaagcttgctgcctccctttgcc 173
>RF00920;MIR444;EU971312.1/141-369 4577:Zea mays
Length = 229
Score = 73.8 bits (37), Expect = 5e-13
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 83 tttcttgcaagttgtgcagttgttgtctcaagcttgctgcc 123
||||||||||||||||||||||||| |||||||||||||||
Sbjct: 189 tttcttgcaagttgtgcagttgttgcctcaagcttgctgcc 229
>RF00920;MIR444;EU948115.1/123-251 4577:Zea mays
Length = 129
Score = 69.9 bits (35), Expect = 8e-12
Identities = 56/63 (88%)
Strand = Plus / Plus
Query: 71 cataccgatgattttcttgcaagttgtgcagttgttgtctcaagcttgctgcctcccttt 130
|||||||||| | ||||||||||| |||||||| || ||||||||| ||||||||||||
Sbjct: 67 cataccgatggtgctcttgcaagttatgcagttgctgcctcaagcttcctgcctcccttt 126
Query: 131 gcc 133
|||
Sbjct: 127 gcc 129
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 25 cttgaggcagcaactgcatatcttgcaaga 54
|||||||||||||||||||| |||||||||
Sbjct: 110 cttgaggcagcaactgcataacttgcaaga 81
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 97 tgcagttgttgtctcaagcttgctgcc 123
||||||||||||||| |||||||||||
Sbjct: 37 tgcagttgttgtctcgagcttgctgcc 11
>RF00920;MIR444;EU971967.1/288-421 4577:Zea mays
Length = 134
Score = 65.9 bits (33), Expect = 1e-10
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 89 gcaagttgtgcagttgttgtctcaagcttgctgcctccctttgcc 133
||||||| |||||||| || |||||||||||||||||||||||||
Sbjct: 90 gcaagttatgcagttgctgcctcaagcttgctgcctccctttgcc 134
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 25 cttgaggcagcaactgcatatcttgc 50
|||||||||||||||||||| |||||
Sbjct: 115 cttgaggcagcaactgcataacttgc 90
