miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU730899.1/56555-56462 15368:Brachypodium
distachyon
Length = 94
Score = 85.7 bits (43), Expect = 1e-16
Identities = 73/83 (87%)
Strand = Plus / Plus
Query: 11 tactccctccgtcccataaatattggcacggttttaaactagagctagttcaaaaccacg 70
|||||||| || ||||||| |||||||||| |||||||||||| ||||||||| ||| |
Sbjct: 5 tactccctttgttccataaagattggcacggctttaaactagagttagttcaaagccatg 64
Query: 71 ccaatctttatggaacggaggga 93
||||||||||| ||||||||||
Sbjct: 65 tcaatctttatgtaacggaggga 87
>RF00906;MIR1122;EF059989.1/27365-27272 29664:Brachypodium
sylvaticum
Length = 94
Score = 77.8 bits (39), Expect = 3e-14
Identities = 69/79 (87%)
Strand = Plus / Minus
Query: 11 tactccctccgtcccataaatattggcacggttttaaactagagctagttcaaaaccacg 70
|||||||||||||||| ||| |||||||||||||| |||||||||||||| ||| ||
Sbjct: 90 tactccctccgtcccacaaagattggcacggttttgaactagagctagtttaaatccgta 31
Query: 71 ccaatctttatggaacgga 89
||||||||||| ||||||
Sbjct: 30 acaatctttatgaaacgga 12
Score = 61.9 bits (31), Expect = 2e-09
Identities = 70/83 (84%)
Strand = Plus / Plus
Query: 11 tactccctccgtcccataaatattggcacggttttaaactagagctagttcaaaaccacg 70
|||||| ||||| |||||| |||| |||| |||||||||| ||||||||||||| |
Sbjct: 5 tactccttccgtttcataaagattgttacggatttaaactagctctagttcaaaaccgtg 64
Query: 71 ccaatctttatggaacggaggga 93
||||||||| ||| |||||||||
Sbjct: 65 ccaatctttgtgggacggaggga 87
>RF00906;MIR1122;FJ234838.1/94689-94596 29664:Brachypodium
sylvaticum
Length = 94
Score = 75.8 bits (38), Expect = 1e-13
Identities = 62/70 (88%)
Strand = Plus / Minus
Query: 11 tactccctccgtcccataaatattggcacggttttaaactagagctagttcaaaaccacg 70
||||||||||||| | |||| |||||||||| ||| |||||||||||||||||| || |
Sbjct: 90 tactccctccgtctcgtaaaaattggcacggatttgaactagagctagttcaaatccgtg 31
Query: 71 ccaatcttta 80
||||||||||
Sbjct: 30 ccaatcttta 21
>RF00906;MIR1122;EU730899.1/79717-79624 15368:Brachypodium
distachyon
Length = 94
Score = 69.9 bits (35), Expect = 6e-12
Identities = 71/83 (85%)
Strand = Plus / Minus
Query: 11 tactccctccgtcccataaatattggcacggttttaaactagagctagttcaaaaccacg 70
|||||||||| | ||||||| |||||||||| ||| |||||| ||||| |||| || |
Sbjct: 90 tactccctccattccataaagattggcacggctttgtactagaactagtacaaagccgct 31
Query: 71 ccaatctttatggaacggaggga 93
||||||||||||||| |||||||
Sbjct: 30 ccaatctttatggaatggaggga 8
Score = 46.1 bits (23), Expect = 9e-05
Identities = 68/83 (81%)
Strand = Plus / Plus
Query: 11 tactccctccgtcccataaatattggcacggttttaaactagagctagttcaaaaccacg 70
|||||||||| | ||||||| ||||| ||| ||| ||||| ||||| |||| || |
Sbjct: 5 tactccctccattccataaagattggagcggctttgtactagttctagtacaaagccgtg 64
Query: 71 ccaatctttatggaacggaggga 93
||||||||||||||| |||||||
Sbjct: 65 ccaatctttatggaatggaggga 87
>RF00906;MIR1122;AP008208.1/277556-277420 39947:Oryza sativa
Japonica Group
Length = 137
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 attactccctccgtcccataaa 30
||||||||||||||||||||||
Sbjct: 3 attactccctccgtcccataaa 24
>RF00906;MIR1122;AACV01010622.1/23023-23178 39947:Oryza sativa
Japonica Group
Length = 156
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 9 attactccctccgtcccataaa 30
||||||||||||||||||||||
Sbjct: 154 attactccctccgtcccataaa 133
>RF00906;MIR1122;AP008209.1/30325748-30325904 39947:Oryza sativa
Japonica Group
Length = 157
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 8 cattactccctccgtcccataa 29
||||||||||||||||||||||
Sbjct: 156 cattactccctccgtcccataa 135
>RF00906;MIR1122;AACV01003164.1/19294-19158 39947:Oryza sativa
Japonica Group
Length = 137
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 9 attactccctccgtcccataaa 30
||||||||||||||||||||||
Sbjct: 135 attactccctccgtcccataaa 114
