miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU282251.1/1314-1209 52152:Elymus repens
Length = 106
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 12 cctccgtcccaaaataagtgtcgcaa 37
||||||||||||||||||||||||||
Sbjct: 10 cctccgtcccaaaataagtgtcgcaa 35
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 12 cctccgtcccaaaataagtgtcgc 35
||||||||||||||||||||||||
Sbjct: 97 cctccgtcccaaaataagtgtcgc 74
>RF00906;MIR1122;EF560592.1/17009-17118 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 110
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 12 cctccgtcccaaaataagtgtcgc 35
||||||||||||||||||||||||
Sbjct: 101 cctccgtcccaaaataagtgtcgc 78
>RF00906;MIR1122;DQ901436.1/1229-1333 4565:Triticum aestivum
(bread wheat)
Length = 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 cctccgtcccaaaataagtgtcgcaac 38
|||||||||||||||||||||| ||||
Sbjct: 10 cctccgtcccaaaataagtgtctcaac 36
>RF00906;MIR1122;AJ400714.1/3663-3767 4565:Triticum aestivum
(bread wheat)
Length = 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 12 cctccgtcccaaaataagtgtcgcaac 38
|||||||||||||||||||||| ||||
Sbjct: 96 cctccgtcccaaaataagtgtctcaac 70
>RF00906;MIR1122;FJ184990.1/3303-3406 4565:Triticum aestivum
(bread wheat)
Length = 104
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 cctccgtcccaaaataagtgtcgcaac 38
|||||||||||||||||||||| ||||
Sbjct: 10 cctccgtcccaaaataagtgtctcaac 36
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 12 cctccgtcccaaaataagtgtc 33
||||||||||||||||||||||
Sbjct: 95 cctccgtcccaaaataagtgtc 74
>RF00906;MIR1122;AB183299.1/312-404 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 cctccgtcccaaaataagtgtcgcaac 38
|||||||||||||||||||||| ||||
Sbjct: 10 cctccgtcccaaaataagtgtctcaac 36
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 12 cctccgtcccaaaataagtgtcgcaac 38
|||||||||||||||||||||| ||||
Sbjct: 84 cctccgtcccaaaataagtgtctcaac 58
>RF00906;MIR1122;CR626933.1/11895-11804 4571:Triticum turgidum
Length = 92
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 11 gcctccgtcccaaaataagtgtc 33
|||||||||||||||||||||||
Sbjct: 86 gcctccgtcccaaaataagtgtc 64
>RF00906;MIR1122;EU282755.1/953-849 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 12 cctccgtcccaaaataagtgtcgcaac 38
|||||||||||||||||||||| ||||
Sbjct: 96 cctccgtcccaaaataagtgtctcaac 70
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 cctccgtcccaaaataagtgtc 33
||||||||||||||||||||||
Sbjct: 10 cctccgtcccaaaataagtgtc 31
>RF00906;MIR1122;AP004740.3/39878-39774 39947:Oryza sativa Japonica
Group
Length = 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 123 ttattttaggacggaggtagtat 145
|||||||||||||||||||||||
Sbjct: 80 ttattttaggacggaggtagtat 102
>RF00906;MIR1122;DQ871219.1/106890-106994 85692:Triticum turgidum
subsp. dicoccoides
Length = 105
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 cctccgtcccaaaataagtgtc 33
||||||||||||||||||||||
Sbjct: 10 cctccgtcccaaaataagtgtc 31
>RF00906;MIR1122;FJ491378.1/3751-3855 4550:Secale cereale (rye)
Length = 105
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 cctccgtcccaaaataagtgtc 33
||||||||||||||||||||||
Sbjct: 10 cctccgtcccaaaataagtgtc 31
>RF00906;MIR1122;AK252392.1/1279-1175 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 cctccgtcccaaaataagtgtc 33
||||||||||||||||||||||
Sbjct: 10 cctccgtcccaaaataagtgtc 31
>RF00906;MIR1122;AK250735.1/291-376 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 86
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 cctccgtcccaaaataagtgtc 33
||||||||||||||||||||||
Sbjct: 10 cctccgtcccaaaataagtgtc 31
>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
Length = 105
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 cctccgtcccaaaataagtgtc 33
||||||||||||||||||||||
Sbjct: 10 cctccgtcccaaaataagtgtc 31
>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
Length = 105
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 cctccgtcccaaaataagtgtc 33
||||||||||||||||||||||
Sbjct: 10 cctccgtcccaaaataagtgtc 31
>RF00906;MIR1122;AY821694.1/1308-1197 37674:Crithopsis delileana
Length = 112
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 cctccgtcccaaaataagtgtc 33
||||||||||||||||||||||
Sbjct: 10 cctccgtcccaaaataagtgtc 31
>RF00906;MIR1122;FJ236275.1/674-570 4573:Aegilops speltoides
Length = 105
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 12 cctccgtcccaaaataagtgtc 33
||||||||||||||||||||||
Sbjct: 96 cctccgtcccaaaataagtgtc 75
>RF00906;MIR1122;AACV01005176.1/8457-8346 39947:Oryza sativa
Japonica Group
Length = 112
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 124 tattttaggacggaggtagtat 145
||||||||||||||||||||||
Sbjct: 88 tattttaggacggaggtagtat 109
>RF00906;MIR1122;AP004753.3/112131-112230 39947:Oryza sativa
Japonica Group
Length = 100
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 124 tattttaggacggaggtagtat 145
||||||||||||||||||||||
Sbjct: 25 tattttaggacggaggtagtat 4
>RF00906;MIR1122;AL731876.3/54416-54305 4530:Oryza sativa (rice)
Length = 112
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 125 attttaggacggaggtagtata 146
||||||||||||||||||||||
Sbjct: 89 attttaggacggaggtagtata 110
