miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU730899.1/86003-86096 15368:Brachypodium
distachyon
Length = 94
Score = 73.8 bits (37), Expect = 4e-13
Identities = 58/65 (89%)
Strand = Plus / Minus
Query: 22 cctccgtcccaaaacaagtgacttagatttgtatagatttttatacaaattcacgtccct 81
|||||||||||||| |||||| | ||||||||||||||||||||||||| || ||| ||
Sbjct: 85 cctccgtcccaaaataagtgatgtggatttgtatagatttttatacaaatccatgtcact 26
Query: 82 tattt 86
|||||
Sbjct: 25 tattt 21
>RF00906;MIR1122;EU730902.1/34504-34625 15368:Brachypodium
distachyon
Length = 122
Score = 52.0 bits (26), Expect = 2e-06
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 62 ttatacaaattcacgtcccttatttccggatggagggagtat 103
|||||||||| |||||| |||||| | |||||||||||||||
Sbjct: 78 ttatacaaatccacgtcacttattgcgggatggagggagtat 119
>RF00906;MIR1122;AK249975.1/2279-2156 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 124
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 82 tatttccggatggagggagtat 103
||||||||||||||||||||||
Sbjct: 25 tatttccggatggagggagtat 4
