miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;FJ234838.1/94689-94596 29664:Brachypodium
sylvaticum
Length = 94
Score = 77.8 bits (39), Expect = 3e-14
Identities = 64/71 (90%), Gaps = 1/71 (1%)
Strand = Plus / Minus
Query: 15 tactccctccgttccataaaagatcggcacgaatttgaactagagctaattcaaatccgt 74
|||||||||||| | ||||| || |||||| |||||||||||||||| |||||||||||
Sbjct: 90 tactccctccgtctcgtaaaa-attggcacggatttgaactagagctagttcaaatccgt 32
Query: 75 gccaatcttta 85
|||||||||||
Sbjct: 31 gccaatcttta 21
Score = 65.9 bits (33), Expect = 1e-10
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 33 aaagatcggcacgaatttgaactagagctaattcaaatccgtgccaatctttatggaacg 92
|||||| |||||| ||||||||||| ||| ||||||||||||||||| |||| | |||
Sbjct: 22 aaagattggcacggatttgaactagctctagttcaaatccgtgccaatttttacgagacg 81
Query: 93 gagggagta 101
|||||||||
Sbjct: 82 gagggagta 90
>RF00906;MIR1122;EF059989.1/27365-27272 29664:Brachypodium
sylvaticum
Length = 94
Score = 71.9 bits (36), Expect = 2e-12
Identities = 76/88 (86%), Gaps = 1/88 (1%)
Strand = Plus / Minus
Query: 15 tactccctccgttccataaaagatcggcacgaatttgaactagagctaattcaaatccgt 74
|||||||||||| ||| ||| ||| |||||| ||||||||||||||| || ||||||||
Sbjct: 90 tactccctccgtcccacaaa-gattggcacggttttgaactagagctagtttaaatccgt 32
Query: 75 gccaatctttatggaacggagggagtag 102
||||||||||| |||||| |||||||
Sbjct: 31 aacaatctttatgaaacggaaggagtag 4
Score = 54.0 bits (27), Expect = 4e-07
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 47 atttgaactagagctaattcaaatccgtgccaatctttatggaacggagggagta 101
|||| |||||| ||| |||||| |||||||||||||| ||| ||||||||||||
Sbjct: 36 atttaaactagctctagttcaaaaccgtgccaatctttgtgggacggagggagta 90
>RF00906;MIR1122;EU730899.1/56555-56462 15368:Brachypodium
distachyon
Length = 94
Score = 63.9 bits (32), Expect = 4e-10
Identities = 75/88 (85%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 15 tactccctccgttccataaaagatcggcacgaatttgaactagagctaattcaaatccgt 74
|||||||| |||||||||| ||| |||||| ||| |||||||| || |||||| || |
Sbjct: 5 tactccctttgttccataaa-gattggcacggctttaaactagagttagttcaaagccat 63
Query: 75 gccaatctttatggaacggagggagtag 102
| ||||||||||| ||||||||||||||
Sbjct: 64 gtcaatctttatgtaacggagggagtag 91
Score = 50.1 bits (25), Expect = 6e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 71 ccgtgccaatctttatggaacggagggagtagc 103
||||||||||||||||||||| ||||||||||
Sbjct: 35 ccgtgccaatctttatggaacaaagggagtagc 3
>RF00906;MIR1122;EU730899.1/79717-79624 15368:Brachypodium
distachyon
Length = 94
Score = 61.9 bits (31), Expect = 2e-09
Identities = 74/87 (85%), Gaps = 1/87 (1%)
Strand = Plus / Minus
Query: 15 tactccctccgttccataaaagatcggcacgaatttgaactagagctaattcaaatccgt 74
|||||||||| ||||||||| ||| |||||| |||| |||||| ||| | |||| |||
Sbjct: 90 tactccctccattccataaa-gattggcacggctttgtactagaactagtacaaagccgc 32
Query: 75 gccaatctttatggaacggagggagta 101
||||||||||||||| ||||||||||
Sbjct: 31 tccaatctttatggaatggagggagta 5
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 66 caaatccgtgccaatctttatggaacggagggagta 101
|||| |||||||||||||||||||| ||||||||||
Sbjct: 55 caaagccgtgccaatctttatggaatggagggagta 90
>RF00906;MIR1122;AACV01023991.1/17005-17122 39947:Oryza sativa
Japonica Group
Length = 118
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 82 tttatggaacggagggagtagct 104
|||||||||||||||||||||||
Sbjct: 95 tttatggaacggagggagtagct 117
>RF00906;MIR1122;AAAA02033498.1/22640-22523 39946:Oryza sativa
Indica Group
Length = 118
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 82 tttatggaacggagggagtagct 104
|||||||||||||||||||||||
Sbjct: 95 tttatggaacggagggagtagct 117
>RF00906;MIR1122;AAAA02000094.1/16089-15933 39946:Oryza sativa
Indica Group
Length = 157
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 83 ttatggaacggagggagtagct 104
||||||||||||||||||||||
Sbjct: 23 ttatggaacggagggagtagct 2
