miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU730900.1/18513-18389 15368:Brachypodium
distachyon
Length = 125
Score = 109 bits (55), Expect = 5e-24
Identities = 73/79 (92%)
Strand = Plus / Plus
Query: 1 ccatattgtttgtcaaaatattacatgtatctagaccctttttaggcatagatacatcca 60
||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 18 ccatattaattgtcaaaatattacatgtatctaaacgctttttaggcatagatacatcca 77
Query: 61 tatttggacaaatttgaga 79
||||||| ||||||||||
Sbjct: 78 tatttgggaaaatttgaga 96
>RF00906;MIR1122;EU730901.1/161594-161470 15368:Brachypodium
distachyon
Length = 125
Score = 109 bits (55), Expect = 5e-24
Identities = 73/79 (92%)
Strand = Plus / Minus
Query: 1 ccatattgtttgtcaaaatattacatgtatctagaccctttttaggcatagatacatcca 60
||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 108 ccatattagttgtcgaaatattacatgtatctagacgctttttaggcatagatacatcca 49
Query: 61 tatttggacaaatttgaga 79
||| ||| |||||||||||
Sbjct: 48 tatctgggcaaatttgaga 30
>RF00906;MIR1122;FJ234838.1/106075-106199 29664:Brachypodium
sylvaticum
Length = 125
Score = 103 bits (52), Expect = 3e-22
Identities = 58/60 (96%)
Strand = Plus / Minus
Query: 19 tattacatgtatctagaccctttttaggcatagatacatccatatttggacaaatttgag 78
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 90 tattacatgtatctagacgctttttaagcatagatacatccatatttggacaaatttgag 31
>RF00906;MIR1122;EF059989.1/56206-56082 29664:Brachypodium
sylvaticum
Length = 125
Score = 103 bits (52), Expect = 3e-22
Identities = 58/60 (96%)
Strand = Plus / Plus
Query: 19 tattacatgtatctagaccctttttaggcatagatacatccatatttggacaaatttgag 78
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 36 tattacatgtatctagacactttttagacatagatacatccatatttggacaaatttgag 95
>RF00906;MIR1122;EU730895.1/43836-43713 15368:Brachypodium
distachyon
Length = 124
Score = 97.6 bits (49), Expect = 2e-20
Identities = 64/69 (92%)
Strand = Plus / Minus
Query: 11 tgtcaaaatattacatgtatctagaccctttttaggcatagatacatccatatttggaca 70
|||| |||||||||||||||||||| ||||||||| |||||||||||||||||||| ||
Sbjct: 97 tgtcgaaatattacatgtatctagatgctttttaggtatagatacatccatatttgggca 38
Query: 71 aatttgaga 79
|||||||||
Sbjct: 37 aatttgaga 29
>RF00906;MIR1122;EF059989.1/156495-156619 29664:Brachypodium
sylvaticum
Length = 125
Score = 93.7 bits (47), Expect = 3e-19
Identities = 68/75 (90%)
Strand = Plus / Plus
Query: 5 attgtttgtcaaaatattacatgtatctagaccctttttaggcatagatacatccatatt 64
|||| ||||| ||||||||||||||||||||| ||||||| ||||||||||| | ||||
Sbjct: 22 attgcttgtcgaaatattacatgtatctagactctttttacacatagatacattcgtatt 81
Query: 65 tggacaaatttgaga 79
|||||||||||||||
Sbjct: 82 tggacaaatttgaga 96
>RF00906;MIR1122;EF059989.1/352416-352302 29664:Brachypodium
sylvaticum
Length = 115
Score = 93.7 bits (47), Expect = 3e-19
Identities = 62/67 (92%)
Strand = Plus / Minus
Query: 1 ccatattgtttgtcaaaatattacatgtatctagaccctttttaggcatagatacatcca 60
||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 98 ccatattaattgtcaaaatattacatgtatctagacgttttttatgcatagatacatcca 39
Query: 61 tatttgg 67
|||||||
Sbjct: 38 tatttgg 32
>RF00906;MIR1122;EU730902.1/127235-127359 15368:Brachypodium
distachyon
Length = 125
Score = 91.7 bits (46), Expect = 1e-18
Identities = 64/70 (91%)
Strand = Plus / Plus
Query: 10 ttgtcaaaatattacatgtatctagaccctttttaggcatagatacatccatatttggac 69
||||| ||||||||||||||||||||| ||||||||| ||||||||||||| ||||| |
Sbjct: 27 ttgtcgaaatattacatgtatctagacgctttttaggaatagatacatccaattttgggc 86
Query: 70 aaatttgaga 79
||||||||||
Sbjct: 87 aaatttgaga 96
>RF00906;MIR1122;EF059989.1/222136-222013 29664:Brachypodium
sylvaticum
Length = 124
Score = 91.7 bits (46), Expect = 1e-18
Identities = 64/70 (91%)
Strand = Plus / Plus
Query: 10 ttgtcaaaatattacatgtatctagaccctttttaggcatagatacatccatatttggac 69
||||| ||||||||||||||||||||| | ||||| | |||||||||||||||||||| |
Sbjct: 27 ttgtcgaaatattacatgtatctagacgcgttttaagaatagatacatccatatttgggc 86
Query: 70 aaatttgaga 79
||||||||||
Sbjct: 87 aaatttgaga 96
>RF00906;MIR1122;EF059989.1/55128-55252 29664:Brachypodium
sylvaticum
Length = 125
Score = 89.7 bits (45), Expect = 5e-18
Identities = 63/69 (91%)
Strand = Plus / Plus
Query: 10 ttgtcaaaatattacatgtatctagaccctttttaggcatagatacatccatatttggac 69
||||| ||||||||||||||||||||| ||||||| | ||||||| |||||||||||| |
Sbjct: 27 ttgtcgaaatattacatgtatctagacgctttttaagaatagatatatccatatttgggc 86
Query: 70 aaatttgag 78
|||||||||
Sbjct: 87 aaatttgag 95
>RF00906;MIR1122;EU730899.1/90906-91030 15368:Brachypodium
distachyon
Length = 125
Score = 87.7 bits (44), Expect = 2e-17
Identities = 59/64 (92%)
Strand = Plus / Plus
Query: 16 aaatattacatgtatctagaccctttttaggcatagatacatccatatttggacaaattt 75
||||||||||||||||||||| ||||||||| |||||||||| ||| ||||| |||||||
Sbjct: 33 aaatattacatgtatctagacactttttaggaatagatacattcatttttggtcaaattt 92
Query: 76 gaga 79
||||
Sbjct: 93 gaga 96
>RF00906;MIR1122;EU730898.1/54746-54622 15368:Brachypodium
distachyon
Length = 125
Score = 83.8 bits (42), Expect = 3e-16
Identities = 63/70 (90%)
Strand = Plus / Minus
Query: 10 ttgtcaaaatattacatgtatctagaccctttttaggcatagatacatccatatttggac 69
||||||||||||||||||||||||||| |||||||| ||||||||||| || |||| |
Sbjct: 99 ttgtcaaaatattacatgtatctagacactttttagaaatagatacatctatttttgagc 40
Query: 70 aaatttgaga 79
||||||||||
Sbjct: 39 aaatttgaga 30
>RF00906;MIR1122;EF059989.1/67137-67261 29664:Brachypodium
sylvaticum
Length = 125
Score = 79.8 bits (40), Expect = 5e-15
Identities = 58/64 (90%)
Strand = Plus / Minus
Query: 16 aaatattacatgtatctagaccctttttaggcatagatacatccatatttggacaaattt 75
|||||||||||||||||| || ||||||| ||||| |||||||||||||||| ||| |||
Sbjct: 93 aaatattacatgtatctaaacgctttttacgcatatatacatccatatttgggcaatttt 34
Query: 76 gaga 79
||||
Sbjct: 33 gaga 30
>RF00906;MIR1122;EF059989.1/223398-223521 29664:Brachypodium
sylvaticum
Length = 124
Score = 77.8 bits (39), Expect = 2e-14
Identities = 70/79 (88%), Gaps = 1/79 (1%)
Strand = Plus / Minus
Query: 1 ccatattgtttgtcaaaatattacatgtatctagaccctttttaggcatagatacatcca 60
||||||| ||||| |||||||||||||||| ||||| |||||||| ||| ||||||| |
Sbjct: 107 ccatattaattgtcgaaatattacatgtatccagacc-tttttaggtataaatacatcta 49
Query: 61 tatttggacaaatttgaga 79
|||||||||||||| ||||
Sbjct: 48 tatttggacaaattcgaga 30
>RF00906;MIR1122;EU730894.1/127135-127259 15368:Brachypodium
distachyon
Length = 125
Score = 75.8 bits (38), Expect = 7e-14
Identities = 62/70 (88%)
Strand = Plus / Plus
Query: 10 ttgtcaaaatattacatgtatctagaccctttttaggcatagatacatccatatttggac 69
||||| ||||||||||||||||||||| ||||||| | ||||||||| | ||||||| |
Sbjct: 27 ttgtcgaaatattacatgtatctagacactttttacacgtagatacattcgtatttgggc 86
Query: 70 aaatttgaga 79
||||||||||
Sbjct: 87 aaatttgaga 96
>RF00906;MIR1122;EU730902.1/94507-94383 15368:Brachypodium
distachyon
Length = 125
Score = 75.8 bits (38), Expect = 7e-14
Identities = 62/70 (88%)
Strand = Plus / Minus
Query: 10 ttgtcaaaatattacatgtatctagaccctttttaggcatagatacatccatatttggac 69
||||| ||||||| |||||||||| || | ||||||| |||||||||||||| ||||| |
Sbjct: 99 ttgtcgaaatattgcatgtatctaaacgccttttaggaatagatacatccatttttgggc 40
Query: 70 aaatttgaga 79
||||||||||
Sbjct: 39 aaatttgaga 30
>RF00906;MIR1122;EF059989.1/52700-52824 29664:Brachypodium
sylvaticum
Length = 125
Score = 75.8 bits (38), Expect = 7e-14
Identities = 62/70 (88%)
Strand = Plus / Plus
Query: 10 ttgtcaaaatattacatgtatctagaccctttttaggcatagatacatccatatttggac 69
||||| ||||||||||||||||||||| ||||||| ||||||| ||| | ||||||| |
Sbjct: 27 ttgtcgaaatattacatgtatctagacgctttttaaacatagatgcattcgtatttgggc 86
Query: 70 aaatttgaga 79
||||||||||
Sbjct: 87 aaatttgaga 96
>RF00906;MIR1122;EU730902.1/55282-55158 15368:Brachypodium
distachyon
Length = 125
Score = 73.8 bits (37), Expect = 3e-13
Identities = 61/69 (88%)
Strand = Plus / Minus
Query: 11 tgtcaaaatattacatgtatctagaccctttttaggcatagatacatccatatttggaca 70
|||| ||||||||||||||||||||| | |||||| |||||||||||||| |||| ||
Sbjct: 98 tgtcgaaatattacatgtatctagacgcattttagaaatagatacatccatctttgagca 39
Query: 71 aatttgaga 79
|||||||||
Sbjct: 38 aatttgaga 30
>RF00906;MIR1122;EF059989.1/365637-365513 29664:Brachypodium
sylvaticum
Length = 125
Score = 71.9 bits (36), Expect = 1e-12
Identities = 45/48 (93%)
Strand = Plus / Minus
Query: 19 tattacatgtatctagaccctttttaggcatagatacatccatatttg 66
||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 90 tattacatgcatctagacattttttaggcatagatacatccatatttg 43
>RF00906;MIR1122;EU730895.1/40339-40463 15368:Brachypodium
distachyon
Length = 125
Score = 69.9 bits (35), Expect = 4e-12
Identities = 68/79 (86%)
Strand = Plus / Plus
Query: 1 ccatattgtttgtcaaaatattacatgtatctagaccctttttaggcatagatacatcca 60
||||||| ||||| ||||||||||| ||||||| | ||||||| ||||||||||| ||
Sbjct: 18 ccatattacttgtcgaaatattacatttatctagtcactttttaaacatagatacattca 77
Query: 61 tatttggacaaatttgaga 79
|||||| |||||||||||
Sbjct: 78 tatttgatcaaatttgaga 96
>RF00906;MIR1122;EU730901.1/108914-109038 15368:Brachypodium
distachyon
Length = 125
Score = 67.9 bits (34), Expect = 2e-11
Identities = 61/70 (87%)
Strand = Plus / Minus
Query: 10 ttgtcaaaatattacatgtatctagaccctttttaggcatagatacatccatatttggac 69
||||| |||| |||||||||||||||| ||||||| | |||||||||||||| |||| |
Sbjct: 99 ttgtcgaaatcttacatgtatctagacactttttatgaatagatacatccatttttgagc 40
Query: 70 aaatttgaga 79
|| |||||||
Sbjct: 39 aactttgaga 30
>RF00906;MIR1122;EU730899.1/99199-99323 15368:Brachypodium
distachyon
Length = 125
Score = 67.9 bits (34), Expect = 2e-11
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 10 ttgtcaaaatattacatgtatctagaccctttttaggcatagatacatccatatttggac 69
||||| ||||||||||||||||||||| | | ||| |||||||||||||| ||||| |
Sbjct: 27 ttgtcgaaatattacatgtatctagacacctcgaaggaatagatacatccatttttgggc 86
Query: 70 aaatttgaga 79
||||||||||
Sbjct: 87 aaatttgaga 96
>RF00906;MIR1122;EF059989.1/222260-222384 29664:Brachypodium
sylvaticum
Length = 125
Score = 65.9 bits (33), Expect = 7e-11
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 10 ttgtcaaaatattacatgtatctagaccctttttaggcatagatacatccatatttggac 69
||||| |||| |||||||||||||||| |||||| | ||| |||||||||| |||||||
Sbjct: 99 ttgtcgaaatcttacatgtatctagacgttttttatgaatatatacatccatttttggac 40
Query: 70 aaatt 74
|||||
Sbjct: 39 aaatt 35
>RF00906;MIR1122;EU730894.1/121201-121325 15368:Brachypodium
distachyon
Length = 125
Score = 63.9 bits (32), Expect = 3e-10
Identities = 65/76 (85%)
Strand = Plus / Minus
Query: 1 ccatattgtttgtcaaaatattacatgtatctagaccctttttaggcatagatacatcca 60
||||||| ||||| |||||||||||||||||||| ||||||| ||| || |||||||
Sbjct: 108 ccatattacttgtcgaaatattacatgtatctagatgctttttaaacattgacacatcca 49
Query: 61 tatttggacaaatttg 76
|| |||| ||||||||
Sbjct: 48 taattgggcaaatttg 33
>RF00906;MIR1122;EU730901.1/65072-65195 15368:Brachypodium
distachyon
Length = 124
Score = 60.0 bits (30), Expect = 4e-09
Identities = 61/70 (87%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 10 ttgtcaaaatattacatgtatctagaccctttttaggcatagatacatccatatttggac 69
||||| |||||||| |||||||||||| |||||| ||||||||||||| |||||| |
Sbjct: 27 ttgtcgaaatattatatgtatctagacg-tttttacacatagatacatccgcatttgggc 85
Query: 70 aaatttgaga 79
||||||||||
Sbjct: 86 aaatttgaga 95
>RF00906;MIR1122;EU730898.1/63863-63739 15368:Brachypodium
distachyon
Length = 125
Score = 60.0 bits (30), Expect = 4e-09
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 10 ttgtcaaaatattacatgtatctagaccctttttaggcatagatacatccatatttggac 69
||||| ||| ||||| ||||||||||| |||||||| |||||||||| || ||||| |
Sbjct: 27 ttgtcgaaacattacgtgtatctagacgctttttagtaatagatacattcaattttgggc 86
Query: 70 aaatttgaga 79
||||||||||
Sbjct: 87 aaatttgaga 96
>RF00906;MIR1122;EF059989.1/159537-159414 29664:Brachypodium
sylvaticum
Length = 124
Score = 60.0 bits (30), Expect = 4e-09
Identities = 55/62 (88%), Gaps = 1/62 (1%)
Strand = Plus / Minus
Query: 16 aaatattacatgtatctagaccctttttaggcatagatacatccatatttggacaaattt 75
||||||||||||||||||||| |||||| | ||||||||| ||||||||||| |||||
Sbjct: 92 aaatattacatgtatctagacgcttttt-gatatagatacaatcatatttggacgaattt 34
Query: 76 ga 77
||
Sbjct: 33 ga 32
>RF00906;MIR1122;EU730902.1/42384-42258 15368:Brachypodium
distachyon
Length = 127
Score = 58.0 bits (29), Expect = 2e-08
Identities = 53/60 (88%), Gaps = 2/60 (3%)
Strand = Plus / Minus
Query: 10 ttgtcaaaatattacatgtatctagac--cctttttaggcatagatacatccatatttgg 67
||||| ||||||||||||||||||||| |||||||| |||||||||||||| |||||
Sbjct: 101 ttgtcgaaatattacatgtatctagacgtgttttttaggaatagatacatccatttttgg 42
>RF00906;MIR1122;EF059989.1/74343-74464 29664:Brachypodium
sylvaticum
Length = 122
Score = 54.0 bits (27), Expect = 3e-07
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 11 tgtcaaaatattacatgtatctagaccctttttaggcatagatacatccat 61
|||||||| ||||||||||||||||| |||||| ||||||||||||||
Sbjct: 95 tgtcaaaacattacatgtatctagacgttttttaactatagatacatccat 45
>RF00906;MIR1122;EU730901.1/58586-58463 15368:Brachypodium
distachyon
Length = 124
Score = 52.0 bits (26), Expect = 1e-06
Identities = 47/54 (87%)
Strand = Plus / Minus
Query: 25 atgtatctagaccctttttaggcatagatacatccatatttggacaaatttgag 78
||||||||| || ||||||| ||| |||||||||||| ||||||||||||||
Sbjct: 84 atgtatctaaacgttttttagccatttatacatccatatctggacaaatttgag 31
>RF00906;MIR1122;EF059989.1/24895-24770 29664:Brachypodium
sylvaticum
Length = 126
Score = 50.1 bits (25), Expect = 4e-06
Identities = 53/61 (86%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 19 tattacatgtatctagaccctttttaggc-atagatacatccatatttggacaaatttga 77
|||||||||||||||||| ||| ||| |||||||| ||||||||| |||||||||||
Sbjct: 36 tattacatgtatctagacgttttctagtatatagatacgtccatatttagacaaatttga 95
Query: 78 g 78
|
Sbjct: 96 g 96
>RF00906;MIR1122;EU730896.1/41625-41750 15368:Brachypodium
distachyon
Length = 126
Score = 48.1 bits (24), Expect = 2e-05
Identities = 55/64 (85%), Gaps = 1/64 (1%)
Strand = Plus / Minus
Query: 17 aatattacatgtatctagaccctttttaggcatagatacatccatatttgga-caaattt 75
|||||||||| ||||||||| |||||| || ||| |||||||||| ||| | |||||||
Sbjct: 93 aatattacatatatctagacactttttcggaataaatacatccatttttttatcaaattt 34
Query: 76 gaga 79
||||
Sbjct: 33 gaga 30
