miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;FJ234838.1/106075-106199 29664:Brachypodium
sylvaticum
Length = 125
Score = 143 bits (72), Expect = 7e-34
Identities = 84/88 (95%)
Strand = Plus / Minus
Query: 44 tattacatgtatctagaccctttttaggcatagatacatccatatttggacaaatttgag 103
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 90 tattacatgtatctagacgctttttaagcatagatacatccatatttggacaaatttgag 31
Query: 104 acaattaatatgggacggagggagtatt 131
|| ||||||||||||||||||||||||
Sbjct: 30 tcacttaatatgggacggagggagtatt 3
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 105 caattaatatgggacggagggagta 129
|||||||||||||||||||||||||
Sbjct: 97 caattaatatgggacggagggagta 121
>RF00906;MIR1122;EU730895.1/43836-43713 15368:Brachypodium
distachyon
Length = 124
Score = 131 bits (66), Expect = 3e-30
Identities = 106/118 (89%), Gaps = 1/118 (0%)
Strand = Plus / Minus
Query: 13 tactccctccatcccatattgtttgtcaaaatattacatgtatctagaccctttttaggc 72
|||||||||| ||||||||| |||| |||||||||||||||||||| |||||||||
Sbjct: 120 tactccctccgtcccatattaagtgtcgaaatattacatgtatctagatgctttttaggt 61
Query: 73 atagatacatccatatttggacaaatttgagacaattaatatgggacggagggagtat 130
|||||||||||||||||||| ||||||||||||| ||||||| |||| ||||||||||
Sbjct: 60 atagatacatccatatttgggcaaatttgagacacttaatat-ggacagagggagtat 4
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 103 gacaattaatatgggacggagggagta 129
|||| ||||||||||||||||||||||
Sbjct: 94 gacacttaatatgggacggagggagta 120
>RF00906;MIR1122;EF059989.1/56206-56082 29664:Brachypodium
sylvaticum
Length = 125
Score = 131 bits (66), Expect = 3e-30
Identities = 81/86 (94%)
Strand = Plus / Plus
Query: 44 tattacatgtatctagaccctttttaggcatagatacatccatatttggacaaatttgag 103
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 36 tattacatgtatctagacactttttagacatagatacatccatatttggacaaatttgag 95
Query: 104 acaattaatatgggacggagggagta 129
|| |||||||| |||||||||||||
Sbjct: 96 tcacttaatatgagacggagggagta 121
>RF00906;MIR1122;EU730901.1/161594-161470 15368:Brachypodium
distachyon
Length = 125
Score = 131 bits (66), Expect = 3e-30
Identities = 105/118 (88%)
Strand = Plus / Minus
Query: 13 tactccctccatcccatattgtttgtcaaaatattacatgtatctagaccctttttaggc 72
|||||||||| ||||||| ||||| ||||||||||||||||||||| ||||||||||
Sbjct: 121 tactccctccgatccatattagttgtcgaaatattacatgtatctagacgctttttaggc 62
Query: 73 atagatacatccatatttggacaaatttgagacaattaatatgggacggagggagtat 130
|||||||||||||||| ||| |||||||||||||||| |||||| |||||| |||||
Sbjct: 61 atagatacatccatatctgggcaaatttgagacaattgatatggatcggaggaagtat 4
>RF00906;MIR1122;EU730900.1/18513-18389 15368:Brachypodium
distachyon
Length = 125
Score = 129 bits (65), Expect = 1e-29
Identities = 104/117 (88%)
Strand = Plus / Plus
Query: 13 tactccctccatcccatattgtttgtcaaaatattacatgtatctagaccctttttaggc 72
|||||||||| ||||||| |||||||||||||||||||||||| || ||||||||||
Sbjct: 5 tactccctccgatccatattaattgtcaaaatattacatgtatctaaacgctttttaggc 64
Query: 73 atagatacatccatatttggacaaatttgagacaattaatatgggacggagggagta 129
|||||||||||||||||||| ||||||||||||||| |||||| || ||||||||
Sbjct: 65 atagatacatccatatttgggaaaatttgagacaattgatatggatcgaagggagta 121
>RF00906;MIR1122;EF059989.1/223398-223521 29664:Brachypodium
sylvaticum
Length = 124
Score = 121 bits (61), Expect = 3e-27
Identities = 104/117 (88%), Gaps = 1/117 (0%)
Strand = Plus / Minus
Query: 13 tactccctccatcccatattgtttgtcaaaatattacatgtatctagaccctttttaggc 72
|||| ||||| | ||||||| ||||| |||||||||||||||| ||||| ||||||||
Sbjct: 120 tacttcctccgttccatattaattgtcgaaatattacatgtatccagacc-tttttaggt 62
Query: 73 atagatacatccatatttggacaaatttgagacaattaatatgggacggagggagta 129
||| ||||||| ||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 61 ataaatacatctatatttggacaaattcgagacaattaatatgggacagagggagta 5
>RF00906;MIR1122;EU730902.1/127235-127359 15368:Brachypodium
distachyon
Length = 125
Score = 111 bits (56), Expect = 3e-24
Identities = 86/96 (89%)
Strand = Plus / Plus
Query: 35 ttgtcaaaatattacatgtatctagaccctttttaggcatagatacatccatatttggac 94
||||| ||||||||||||||||||||| ||||||||| ||||||||||||| ||||| |
Sbjct: 27 ttgtcgaaatattacatgtatctagacgctttttaggaatagatacatccaattttgggc 86
Query: 95 aaatttgagacaattaatatgggacggagggagtat 130
||||||||||||| | ||||| |||||||||||||
Sbjct: 87 aaatttgagacaagaattatggaacggagggagtat 122
>RF00906;MIR1122;EF059989.1/52700-52824 29664:Brachypodium
sylvaticum
Length = 125
Score = 109 bits (55), Expect = 1e-23
Identities = 85/95 (89%)
Strand = Plus / Plus
Query: 35 ttgtcaaaatattacatgtatctagaccctttttaggcatagatacatccatatttggac 94
||||| ||||||||||||||||||||| ||||||| ||||||| ||| | ||||||| |
Sbjct: 27 ttgtcgaaatattacatgtatctagacgctttttaaacatagatgcattcgtatttgggc 86
Query: 95 aaatttgagacaattaatatgggacggagggagta 129
||||||||||||| ||||||||| |||||||||||
Sbjct: 87 aaatttgagacaagtaatatgggtcggagggagta 121
>RF00906;MIR1122;EU730895.1/40339-40463 15368:Brachypodium
distachyon
Length = 125
Score = 105 bits (53), Expect = 2e-22
Identities = 101/117 (86%)
Strand = Plus / Plus
Query: 13 tactccctccatcccatattgtttgtcaaaatattacatgtatctagaccctttttaggc 72
|||||||||| |||||||| ||||| ||||||||||| ||||||| | ||||||| |
Sbjct: 5 tactccctccgacccatattacttgtcgaaatattacatttatctagtcactttttaaac 64
Query: 73 atagatacatccatatttggacaaatttgagacaattaatatgggacggagggagta 129
|||||||||| |||||||| |||||||||||||| |||||||| |||||||||||
Sbjct: 65 atagatacattcatatttgatcaaatttgagacaagtaatatggatcggagggagta 121
>RF00906;MIR1122;EU730894.1/121201-121325 15368:Brachypodium
distachyon
Length = 125
Score = 105 bits (53), Expect = 2e-22
Identities = 101/117 (86%)
Strand = Plus / Minus
Query: 13 tactccctccatcccatattgtttgtcaaaatattacatgtatctagaccctttttaggc 72
|||||||||| |||||||| ||||| |||||||||||||||||||| ||||||| |
Sbjct: 121 tactccctccgacccatattacttgtcgaaatattacatgtatctagatgctttttaaac 62
Query: 73 atagatacatccatatttggacaaatttgagacaattaatatgggacggagggagta 129
|| || ||||||||| |||| |||||||| ||||| ||||||||| |||||||||||
Sbjct: 61 attgacacatccataattgggcaaatttgtgacaagtaatatgggtcggagggagta 5
>RF00906;MIR1122;EF059989.1/156495-156619 29664:Brachypodium
sylvaticum
Length = 125
Score = 103 bits (52), Expect = 6e-22
Identities = 76/84 (90%)
Strand = Plus / Plus
Query: 30 attgtttgtcaaaatattacatgtatctagaccctttttaggcatagatacatccatatt 89
|||| ||||| ||||||||||||||||||||| ||||||| ||||||||||| | ||||
Sbjct: 22 attgcttgtcgaaatattacatgtatctagactctttttacacatagatacattcgtatt 81
Query: 90 tggacaaatttgagacaattaata 113
|||||||||||||||||| |||||
Sbjct: 82 tggacaaatttgagacaagtaata 105
>RF00906;MIR1122;EF059989.1/365637-365513 29664:Brachypodium
sylvaticum
Length = 125
Score = 99.6 bits (50), Expect = 1e-20
Identities = 77/86 (89%)
Strand = Plus / Minus
Query: 44 tattacatgtatctagaccctttttaggcatagatacatccatatttggacaaatttgag 103
||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct: 90 tattacatgcatctagacattttttaggcatagatacatccatatttgattaaatttgag 31
Query: 104 acaattaatatgggacggagggagta 129
|| ||||||| ||||||||||||||
Sbjct: 30 tcacttaatataggacggagggagta 5
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 108 ttaatatgggacggagggagtatta 132
|||||||||||||||||||||||||
Sbjct: 100 ttaatatgggacggagggagtatta 124
>RF00906;MIR1122;EU730898.1/54746-54622 15368:Brachypodium
distachyon
Length = 125
Score = 99.6 bits (50), Expect = 1e-20
Identities = 86/98 (87%)
Strand = Plus / Minus
Query: 35 ttgtcaaaatattacatgtatctagaccctttttaggcatagatacatccatatttggac 94
||||||||||||||||||||||||||| |||||||| ||||||||||| || |||| |
Sbjct: 99 ttgtcaaaatattacatgtatctagacactttttagaaatagatacatctatttttgagc 40
Query: 95 aaatttgagacaattaatatgggacggagggagtatta 132
||||||||||||| | |||| |||||||||||||||
Sbjct: 39 aaatttgagacaagaattatgaaacggagggagtatta 2
>RF00906;MIR1122;EU730899.1/90906-91030 15368:Brachypodium
distachyon
Length = 125
Score = 97.6 bits (49), Expect = 4e-20
Identities = 79/89 (88%)
Strand = Plus / Plus
Query: 41 aaatattacatgtatctagaccctttttaggcatagatacatccatatttggacaaattt 100
||||||||||||||||||||| ||||||||| |||||||||| ||| ||||| |||||||
Sbjct: 33 aaatattacatgtatctagacactttttaggaatagatacattcatttttggtcaaattt 92
Query: 101 gagacaattaatatgggacggagggagta 129
||||||| | ||| | ||||||||||||
Sbjct: 93 gagacaagaattatcgaacggagggagta 121
>RF00906;MIR1122;EF059989.1/67137-67261 29664:Brachypodium
sylvaticum
Length = 125
Score = 97.6 bits (49), Expect = 4e-20
Identities = 79/89 (88%)
Strand = Plus / Minus
Query: 41 aaatattacatgtatctagaccctttttaggcatagatacatccatatttggacaaattt 100
|||||||||||||||||| || ||||||| ||||| |||||||||||||||| ||| |||
Sbjct: 93 aaatattacatgtatctaaacgctttttacgcatatatacatccatatttgggcaatttt 34
Query: 101 gagacaattaatatgggacggagggagta 129
||||||| ||||| || |||||||||||
Sbjct: 33 gagacaagtaataccggtcggagggagta 5
>RF00906;MIR1122;EF059989.1/222136-222013 29664:Brachypodium
sylvaticum
Length = 124
Score = 97.6 bits (49), Expect = 4e-20
Identities = 67/73 (91%)
Strand = Plus / Plus
Query: 35 ttgtcaaaatattacatgtatctagaccctttttaggcatagatacatccatatttggac 94
||||| ||||||||||||||||||||| | ||||| | |||||||||||||||||||| |
Sbjct: 27 ttgtcgaaatattacatgtatctagacgcgttttaagaatagatacatccatatttgggc 86
Query: 95 aaatttgagacaa 107
|||||||||||||
Sbjct: 87 aaatttgagacaa 99
>RF00906;MIR1122;EU730900.1/55128-55253 15368:Brachypodium
distachyon
Length = 126
Score = 95.6 bits (48), Expect = 2e-19
Identities = 103/120 (85%), Gaps = 1/120 (0%)
Strand = Plus / Plus
Query: 13 tactccctccatcccatattgtttgtcaaaatattacatgtatctagaccctttttaggc 72
|||||||||| ||||||||| | || ||||||||||||||||||||| ||||||
Sbjct: 5 tactccctccgtcccatattaagtttcgaaatattacatgtatctagacgtattttagta 64
Query: 73 -atagatacatccatatttggacaaatttgagacaattaatatgggacggagggagtatt 131
|||||||| ||||| ||| |||||||||||| || ||||||||||||||||||||||||
Sbjct: 65 tatagatacgtccatttttagacaaatttgagtcacttaatatgggacggagggagtatt 124
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 108 ttaatatgggacggagggagtatta 132
|||||||||||||||||||||||||
Sbjct: 26 ttaatatgggacggagggagtatta 2
>RF00906;MIR1122;EU730902.1/94507-94383 15368:Brachypodium
distachyon
Length = 125
Score = 95.6 bits (48), Expect = 2e-19
Identities = 84/96 (87%)
Strand = Plus / Minus
Query: 35 ttgtcaaaatattacatgtatctagaccctttttaggcatagatacatccatatttggac 94
||||| ||||||| |||||||||| || | ||||||| |||||||||||||| ||||| |
Sbjct: 99 ttgtcgaaatattgcatgtatctaaacgccttttaggaatagatacatccatttttgggc 40
Query: 95 aaatttgagacaattaatatgggacggagggagtat 130
||||||||||||| | ||||| |||||||||||||
Sbjct: 39 aaatttgagacaaaaattatggaacggagggagtat 4
>RF00906;MIR1122;EF059989.1/352416-352302 29664:Brachypodium
sylvaticum
Length = 115
Score = 95.6 bits (48), Expect = 2e-19
Identities = 72/80 (90%)
Strand = Plus / Minus
Query: 13 tactccctccatcccatattgtttgtcaaaatattacatgtatctagaccctttttaggc 72
|||||||||| ||||||| ||||||||||||||||||||||||||| |||||| ||
Sbjct: 111 tactccctccgatccatattaattgtcaaaatattacatgtatctagacgttttttatgc 52
Query: 73 atagatacatccatatttgg 92
||||||||||||||||||||
Sbjct: 51 atagatacatccatatttgg 32
>RF00906;MIR1122;EU730894.1/127135-127259 15368:Brachypodium
distachyon
Length = 125
Score = 93.7 bits (47), Expect = 6e-19
Identities = 83/95 (87%)
Strand = Plus / Plus
Query: 35 ttgtcaaaatattacatgtatctagaccctttttaggcatagatacatccatatttggac 94
||||| ||||||||||||||||||||| ||||||| | ||||||||| | ||||||| |
Sbjct: 27 ttgtcgaaatattacatgtatctagacactttttacacgtagatacattcgtatttgggc 86
Query: 95 aaatttgagacaattaatatgggacggagggagta 129
||||||||||||| ||||| || |||||||||||
Sbjct: 87 aaatttgagacaagtaataccggtcggagggagta 121
>RF00906;MIR1122;EF059989.1/55128-55252 29664:Brachypodium
sylvaticum
Length = 125
Score = 89.7 bits (45), Expect = 9e-18
Identities = 63/69 (91%)
Strand = Plus / Plus
Query: 35 ttgtcaaaatattacatgtatctagaccctttttaggcatagatacatccatatttggac 94
||||| ||||||||||||||||||||| ||||||| | ||||||| |||||||||||| |
Sbjct: 27 ttgtcgaaatattacatgtatctagacgctttttaagaatagatatatccatatttgggc 86
Query: 95 aaatttgag 103
|||||||||
Sbjct: 87 aaatttgag 95
>RF00906;MIR1122;EU730901.1/108914-109038 15368:Brachypodium
distachyon
Length = 125
Score = 85.7 bits (43), Expect = 1e-16
Identities = 82/95 (86%)
Strand = Plus / Minus
Query: 35 ttgtcaaaatattacatgtatctagaccctttttaggcatagatacatccatatttggac 94
||||| |||| |||||||||||||||| ||||||| | |||||||||||||| |||| |
Sbjct: 99 ttgtcgaaatcttacatgtatctagacactttttatgaatagatacatccatttttgagc 40
Query: 95 aaatttgagacaattaatatgggacggagggagta 129
|| |||||||||| | ||||| ||||||||||||
Sbjct: 39 aactttgagacaagaattatggaacggagggagta 5
>RF00906;MIR1122;EF059989.1/24895-24770 29664:Brachypodium
sylvaticum
Length = 126
Score = 85.7 bits (43), Expect = 1e-16
Identities = 77/87 (88%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 44 tattacatgtatctagaccctttttaggc-atagatacatccatatttggacaaatttga 102
|||||||||||||||||| ||| ||| |||||||| ||||||||| |||||||||||
Sbjct: 36 tattacatgtatctagacgttttctagtatatagatacgtccatatttagacaaatttga 95
Query: 103 gacaattaatatgggacggagggagta 129
| || ||||||||||||||||||||||
Sbjct: 96 gtcacttaatatgggacggagggagta 122
>RF00906;MIR1122;EU730901.1/58586-58463 15368:Brachypodium
distachyon
Length = 124
Score = 81.8 bits (41), Expect = 2e-15
Identities = 71/81 (87%)
Strand = Plus / Minus
Query: 50 atgtatctagaccctttttaggcatagatacatccatatttggacaaatttgagacaatt 109
||||||||| || ||||||| ||| |||||||||||| |||||||||||||| || ||
Sbjct: 84 atgtatctaaacgttttttagccatttatacatccatatctggacaaatttgagtcactt 25
Query: 110 aatatgggacggagggagtat 130
|||||||||||||| ||||||
Sbjct: 24 aatatgggacggagagagtat 4
>RF00906;MIR1122;EF059989.1/159537-159414 29664:Brachypodium
sylvaticum
Length = 124
Score = 81.8 bits (41), Expect = 2e-15
Identities = 78/89 (87%), Gaps = 1/89 (1%)
Strand = Plus / Minus
Query: 41 aaatattacatgtatctagaccctttttaggcatagatacatccatatttggacaaattt 100
||||||||||||||||||||| |||||| | ||||||||| ||||||||||| |||||
Sbjct: 92 aaatattacatgtatctagacgcttttt-gatatagatacaatcatatttggacgaattt 34
Query: 101 gagacaattaatatgggacggagggagta 129
|| || |||||||| |||||||||||||
Sbjct: 33 gaatcacttaatatgagacggagggagta 5
>RF00906;MIR1122;EU730902.1/55282-55158 15368:Brachypodium
distachyon
Length = 125
Score = 79.8 bits (40), Expect = 9e-15
Identities = 64/72 (88%)
Strand = Plus / Minus
Query: 36 tgtcaaaatattacatgtatctagaccctttttaggcatagatacatccatatttggaca 95
|||| ||||||||||||||||||||| | |||||| |||||||||||||| |||| ||
Sbjct: 98 tgtcgaaatattacatgtatctagacgcattttagaaatagatacatccatctttgagca 39
Query: 96 aatttgagacaa 107
||||||||||||
Sbjct: 38 aatttgagacaa 27
>RF00906;MIR1122;EU730902.1/42384-42258 15368:Brachypodium
distachyon
Length = 127
Score = 79.8 bits (40), Expect = 9e-15
Identities = 100/119 (84%), Gaps = 2/119 (1%)
Strand = Plus / Minus
Query: 13 tactccctccatcccatattgtttgtcaaaatattacatgtatctagaccc--tttttag 70
|||||||||| | ||||| | ||||| ||||||||||||||||||||| |||||||
Sbjct: 123 tactccctccgttccataattcttgtcgaaatattacatgtatctagacgtgttttttag 64
Query: 71 gcatagatacatccatatttggacaaatttgagacaattaatatgggacggagggagta 129
| |||||||||||||| ||||| |||||||||||| | ||||| ||||||||||||
Sbjct: 63 gaatagatacatccatttttgggttaatttgagacaagaattatggaacggagggagta 5
>RF00906;MIR1122;EU730901.1/65072-65195 15368:Brachypodium
distachyon
Length = 124
Score = 77.8 bits (39), Expect = 4e-14
Identities = 82/95 (86%), Gaps = 1/95 (1%)
Strand = Plus / Plus
Query: 35 ttgtcaaaatattacatgtatctagaccctttttaggcatagatacatccatatttggac 94
||||| |||||||| |||||||||||| |||||| ||||||||||||| |||||| |
Sbjct: 27 ttgtcgaaatattatatgtatctagacg-tttttacacatagatacatccgcatttgggc 85
Query: 95 aaatttgagacaattaatatgggacggagggagta 129
||||||||||||| ||||| || |||||||||||
Sbjct: 86 aaatttgagacaagtaataccggtcggagggagta 120
>RF00906;MIR1122;EU730899.1/99199-99323 15368:Brachypodium
distachyon
Length = 125
Score = 77.8 bits (39), Expect = 4e-14
Identities = 81/95 (85%)
Strand = Plus / Plus
Query: 35 ttgtcaaaatattacatgtatctagaccctttttaggcatagatacatccatatttggac 94
||||| ||||||||||||||||||||| | | ||| |||||||||||||| ||||| |
Sbjct: 27 ttgtcgaaatattacatgtatctagacacctcgaaggaatagatacatccatttttgggc 86
Query: 95 aaatttgagacaattaatatgggacggagggagta 129
||||||||||||| | ||||| ||||| ||||||
Sbjct: 87 aaatttgagacaagaattatggaacggaaggagta 121
>RF00906;MIR1122;EF059989.1/74343-74464 29664:Brachypodium
sylvaticum
Length = 122
Score = 73.8 bits (37), Expect = 6e-13
Identities = 83/96 (86%), Gaps = 3/96 (3%)
Strand = Plus / Minus
Query: 36 tgtcaaaatattacatgtatctagaccctttttaggcatagatacatccatatttggaca 95
|||||||| ||||||||||||||||| |||||| |||||||||||||| ||| | |
Sbjct: 95 tgtcaaaacattacatgtatctagacgttttttaactatagatacatccatgttt--aaa 38
Query: 96 aatttgagacaattaatatgggacggagggagtatt 131
||||||||||| |||| || ||||||||||||||||
Sbjct: 37 aatttgagacacttaacat-ggacggagggagtatt 3
>RF00906;MIR1122;EU730898.1/63863-63739 15368:Brachypodium
distachyon
Length = 125
Score = 69.9 bits (35), Expect = 9e-12
Identities = 80/95 (84%)
Strand = Plus / Plus
Query: 13 tactccctccatcccatattgtttgtcaaaatattacatgtatctagaccctttttaggc 72
|||||||||| | ||||| | ||||| ||| ||||| ||||||||||| ||||||||
Sbjct: 5 tactccctccgttccataattcttgtcgaaacattacgtgtatctagacgctttttagta 64
Query: 73 atagatacatccatatttggacaaatttgagacaa 107
|||||||||| || ||||| ||||||||||||||
Sbjct: 65 atagatacattcaattttgggcaaatttgagacaa 99
>RF00906;MIR1122;EF059989.1/222260-222384 29664:Brachypodium
sylvaticum
Length = 125
Score = 65.9 bits (33), Expect = 1e-10
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 35 ttgtcaaaatattacatgtatctagaccctttttaggcatagatacatccatatttggac 94
||||| |||| |||||||||||||||| |||||| | ||| |||||||||| |||||||
Sbjct: 99 ttgtcgaaatcttacatgtatctagacgttttttatgaatatatacatccatttttggac 40
Query: 95 aaatt 99
|||||
Sbjct: 39 aaatt 35
>RF00906;MIR1122;EF059989.1/54267-54145 29664:Brachypodium
sylvaticum
Length = 123
Score = 60.0 bits (30), Expect = 8e-09
Identities = 96/117 (82%), Gaps = 2/117 (1%)
Strand = Plus / Minus
Query: 13 tactccctccatcccatattgtttgtcaaaatattacatgtatctagaccctttttaggc 72
|||||||||| ||||||| | | ||| |||||||||||||||||||| |||||
Sbjct: 119 tactccctccgtcccataattctcgtcgaaatattacatgtatctagatatttttttaaa 60
Query: 73 atagatacatccatatttggacaaatttgagacaattaatatgggacggagggagta 129
|||||||||||||| ||||| ||||||||||||| | |||| ||||||||||||
Sbjct: 59 atagatacatccatttttgg--aaatttgagacaagaattatgaaacggagggagta 5
>RF00906;MIR1122;AY485644.1/84291-84425 4568:Triticum monococcum
Length = 135
Score = 58.0 bits (29), Expect = 3e-08
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 77 atacatccatatttggacaaatttgagacaattaatatgggacggagggagta 129
|||||||||||||| ||||||||| |||||| | | ||||||||||||||||
Sbjct: 57 atacatccatatttagacaaatttaagacaacaattttgggacggagggagta 5
>RF00906;MIR1122;EU730896.1/41625-41750 15368:Brachypodium
distachyon
Length = 126
Score = 56.0 bits (28), Expect = 1e-07
Identities = 80/96 (83%), Gaps = 1/96 (1%)
Strand = Plus / Minus
Query: 13 tactccctccatcccatattgtttgtcaaaatattacatgtatctagaccctttttaggc 72
|||||||||| | ||||| | ||||| |||||||||| ||||||||| |||||| ||
Sbjct: 122 tactccctccgttccataattcttgtctcaatattacatatatctagacactttttcgga 63
Query: 73 atagatacatccatatttgga-caaatttgagacaa 107
||| |||||||||| ||| | ||||||||||||||
Sbjct: 62 ataaatacatccatttttttatcaaatttgagacaa 27
>RF00906;MIR1122;FJ374610.1/683-817 4568:Triticum monococcum
Length = 135
Score = 52.0 bits (26), Expect = 2e-06
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 74 tagatacatccatatttggacaaatttgagacaattaatatgggacggagggagtatt 131
||||||||||||||| | ||||||| | |||||| | | ||||||||||||||||||
Sbjct: 76 tagatacatccatatctagacaaatctaagacaagaattttgggacggagggagtatt 133
>RF00906;MIR1122;EU730895.1/70118-69993 15368:Brachypodium
distachyon
Length = 126
Score = 52.0 bits (26), Expect = 2e-06
Identities = 96/118 (81%), Gaps = 1/118 (0%)
Strand = Plus / Plus
Query: 13 tactccctccatcccatattgtttgtcaaaatattacatgtatctagaccctttttaggc 72
|||||||||| ||||||||| || | |||||||| ||||||||| || ||||||
Sbjct: 5 tactccctccgtcccatattaagtgccgaaatattatatgtatctaaacatattttagta 64
Query: 73 -atagatacatccatatttggacaaatttgagacaattaatatgggacggagggagta 129
|||||||| | ||| ||| ||||||||| || || ||||||||||| ||||||||||
Sbjct: 65 tatagatacgtacatttttagacaaatttaagtcacttaatatgggatggagggagta 122
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 9 ttattactccctccatcccatatt 32
||||||||||||||||||||||||
Sbjct: 126 ttattactccctccatcccatatt 103
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 108 ttaatatgggacggagggagta 129
||||||||||||||||||||||
Sbjct: 26 ttaatatgggacggagggagta 5
>RF00906;MIR1122;EF540321.1/52965-52831 4571:Triticum turgidum
Length = 135
Score = 48.1 bits (24), Expect = 3e-05
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 74 tagatacatccatatttggacaaatttgagacaattaatatgggacggaggg 125
||||||||||| ||||| ||||||||| |||||| | | ||||||||||||
Sbjct: 76 tagatacatccgtatttagacaaatttaagacaagaattttgggacggaggg 127
>RF00906;MIR1122;AB182945.1/6773-6906 4565:Triticum aestivum (bread
wheat)
Length = 134
Score = 48.1 bits (24), Expect = 3e-05
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 74 tagatacatccatatttggacaaatttgagacaattaatatgggacggagggagtattac 133
|||||||||||| ||| | ||||| ||||||| ||| | ||| ||||||||||||||||
Sbjct: 75 tagatacatccactttttggcaaatctgagacacttattttggaacggagggagtattac 134
>RF00906;MIR1122;AAAA02020195.1/3874-3739 39946:Oryza sativa Indica
Group
Length = 136
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 109 taatatgggacggagggagtatta 132
||||||||||||||||||||||||
Sbjct: 25 taatatgggacggagggagtatta 2
>RF00906;MIR1122;AACV01014515.1/3255-3390 39947:Oryza sativa
Japonica Group
Length = 136
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 109 taatatgggacggagggagtatta 132
||||||||||||||||||||||||
Sbjct: 25 taatatgggacggagggagtatta 2
>RF00906;MIR1122;EU730902.1/30283-30160 15368:Brachypodium
distachyon
Length = 124
Score = 46.1 bits (23), Expect = 1e-04
Identities = 78/95 (82%), Gaps = 1/95 (1%)
Strand = Plus / Minus
Query: 13 tactccctccatcccatattgtttgtcaaaatattacatgtatctagaccctttttaggc 72
|||||||||| || |||| | ||||| |||||| | ||| ||||| || ||||||||
Sbjct: 120 tactccctccgtctcataattcttgtcgaaatatcagatgcatctaaacgctttttagaa 61
Query: 73 atagatacatccatatttggacaaatttgagacaa 107
|||| |||||| || ||||| ||||||||||||||
Sbjct: 60 atagctacatc-atttttgggcaaatttgagacaa 27
>RF00906;MIR1122;AF488415.1/78603-78755 4568:Triticum monococcum
Length = 153
Score = 44.1 bits (22), Expect = 5e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 93 acaaatttgagacaattaatatgggacggagggagtat 130
||||| |||||||| ||| | |||||||||||||||||
Sbjct: 113 acaaacttgagacagttattttgggacggagggagtat 150
>RF00906;MIR1122;AY821733.1/621-487 4568:Triticum monococcum
Length = 135
Score = 44.1 bits (22), Expect = 5e-04
Identities = 46/54 (85%)
Strand = Plus / Minus
Query: 76 gatacatccatatttggacaaatttgagacaattaatatgggacggagggagta 129
||||||||| ||||| ||||||| | |||||| | | ||||||||||||||||
Sbjct: 58 gatacatccgtatttagacaaatctaagacaagaattttgggacggagggagta 5
>RF00906;MIR1122;DQ445236.1/13423-13319 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 44.1 bits (22), Expect = 5e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 93 acaaatttgagacaattaatatgggacggagggagtat 130
|||||||||||||| ||| | ||| |||||||||||||
Sbjct: 41 acaaatttgagacacttattttggaacggagggagtat 4
>RF00906;MIR1122;EU282755.1/953-849 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 44.1 bits (22), Expect = 5e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 93 acaaatttgagacaattaatatgggacggagggagtat 130
||||| |||||||| ||| | |||||||||||||||||
Sbjct: 65 acaaagttgagacacttattttgggacggagggagtat 102
>RF00906;MIR1122;AF277239.1/1056-1190 37679:Heteranthelium piliferum
Length = 135
Score = 44.1 bits (22), Expect = 5e-04
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 74 tagatacatccatatttggacaaatttgagacaattaatatgggacggagggagtatt 131
||||||||||| ||||| ||||||| | ||||| | | ||||||||||||||||||
Sbjct: 60 tagatacatccgtatttagacaaatctatgacaagaattttgggacggagggagtatt 3
>RF00906;MIR1122;AAAA02017235.1/6832-6953 39946:Oryza sativa Indica
Group
Length = 122
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 109 taatatgggacggagggagtat 130
||||||||||||||||||||||
Sbjct: 98 taatatgggacggagggagtat 119
