miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU730900.1/55128-55253 15368:Brachypodium
distachyon
Length = 126
Score = 115 bits (58), Expect = 2e-25
Identities = 104/119 (87%), Gaps = 4/119 (3%)
Strand = Plus / Minus
Query: 11 atactccctctgtcccatattaagtgactcaaatttatctaaatataaacgtatgtgtat 70
|||||||||| ||||||||||||||||||||||||| |||||| || |||||| | |||
Sbjct: 123 atactccctccgtcccatattaagtgactcaaatttgtctaaaaatggacgtatctatat 64
Query: 71 agtaaaacacgtctagataaatgtaata----gaaagttaatatgggacggagggagta 125
| ||||| ||||||||||| |||||||| |||| ||||||||||||||||||||||
Sbjct: 63 actaaaatacgtctagatacatgtaatatttcgaaacttaatatgggacggagggagta 5
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 104 ttaatatgggacggagggagta 125
||||||||||||||||||||||
Sbjct: 101 ttaatatgggacggagggagta 122
>RF00906;MIR1122;EF059989.1/24895-24770 29664:Brachypodium
sylvaticum
Length = 126
Score = 113 bits (57), Expect = 6e-25
Identities = 103/118 (87%), Gaps = 4/118 (3%)
Strand = Plus / Minus
Query: 12 tactccctctgtcccatattaagtgactcaaatttatctaaatataaacgtatgtgtata 71
||||||||| ||||||||||||||||||||||||| ||||||||| |||||| | ||||
Sbjct: 122 tactccctccgtcccatattaagtgactcaaatttgtctaaatatggacgtatctatata 63
Query: 72 gtaaaacacgtctagataaatgtaatagaaag----ttaatatgggacggagggagta 125
|| || ||||||||||| ||||||||||||| ||||| ||||||||||||||||
Sbjct: 62 ctagaaaacgtctagatacatgtaatagaaagtcacttaatttgggacggagggagta 5
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 104 ttaatatgggacggagggagtagat 128
|||||||||||||||||||||||||
Sbjct: 101 ttaatatgggacggagggagtagat 125
>RF00906;MIR1122;FJ234838.1/106075-106199 29664:Brachypodium
sylvaticum
Length = 125
Score = 75.8 bits (38), Expect = 1e-13
Identities = 100/119 (84%), Gaps = 5/119 (4%)
Strand = Plus / Plus
Query: 11 atactccctctgtcccatattaagtgactcaaatttatctaaatataaacgtatgtgtat 70
|||||||||| ||||||||||||||||||||||||| || |||||| | |||| | |
Sbjct: 4 atactccctccgtcccatattaagtgactcaaatttgtccaaatatggatgtatctat-g 62
Query: 71 agtaaaacacgtctagataaatgtaatagaaag----ttaatatgggacggagggagta 125
||||| |||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct: 63 cttaaaaagcgtctagatacatgtaatagaaagtcaattaatatgggacggagggagta 121
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 104 ttaatatgggacggagggagta 125
||||||||||||||||||||||
Sbjct: 26 ttaatatgggacggagggagta 5
>RF00906;MIR1122;EU730895.1/70118-69993 15368:Brachypodium
distachyon
Length = 126
Score = 58.0 bits (29), Expect = 3e-08
Identities = 96/118 (81%), Gaps = 4/118 (3%)
Strand = Plus / Minus
Query: 12 tactccctctgtcccatattaagtgactcaaatttatctaaatataaacgtatgtgtata 71
||||||||| ||||||||||||||||| |||||| |||||| || |||||| | ||||
Sbjct: 122 tactccctccatcccatattaagtgacttaaatttgtctaaaaatgtacgtatctatata 63
Query: 72 gtaaaacacgtctagataaatgtaata----gaaagttaatatgggacggagggagta 125
||||| | || |||||| || ||||| | | ||||||||||||||||||||||
Sbjct: 62 ctaaaatatgtttagatacatataatatttcggcacttaatatgggacggagggagta 5
>RF00906;MIR1122;EF059989.1/56206-56082 29664:Brachypodium
sylvaticum
Length = 125
Score = 58.0 bits (29), Expect = 3e-08
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 12 tactccctctgtcccatattaagtgactcaaatttatctaaatat 56
||||||||| ||| ||||||||||||||||||||| || ||||||
Sbjct: 121 tactccctccgtctcatattaagtgactcaaatttgtccaaatat 77
>RF00906;MIR1122;EU730901.1/58586-58463 15368:Brachypodium
distachyon
Length = 124
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 11 atactccctctgtcccatattaagtgactcaaattt 46
|||||| ||| |||||||||||||||||||||||||
Sbjct: 4 atactctctccgtcccatattaagtgactcaaattt 39
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 10 tatactccctctgtcccatattaagtgact 39
||||||| ||| ||||||||||||||||||
Sbjct: 122 tatactcgctccgtcccatattaagtgact 93
>RF00906;MIR1122;EF059989.1/365637-365513 29664:Brachypodium
sylvaticum
Length = 125
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 12 tactccctctgtcccatattaagtgactcaaattta 47
||||||||| |||| |||||||||||||||||||||
Sbjct: 5 tactccctccgtcctatattaagtgactcaaattta 40
>RF00906;MIR1122;FJ491378.1/4581-4466 4550:Secale cereale (rye)
Length = 116
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 10 tatactccctctgtcccatattaagtgactcaaa 43
|||||||||||||||||| | |||||||||||||
Sbjct: 3 tatactccctctgtcccaaaataagtgactcaaa 36
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 9 ttatactccctctgtcccatattaagtgactcaaa 43
|||||||||||| |||||| | |||||||||||||
Sbjct: 115 ttatactccctccgtcccaaaataagtgactcaaa 81
>RF00906;MIR1122;EF059989.1/223398-223521 29664:Brachypodium
sylvaticum
Length = 124
Score = 52.0 bits (26), Expect = 2e-06
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 12 tactccctctgtcccatattaagtgactcaaatttatctaaatata 57
|||||||||||||||||||||| || ||| ||||| || |||||||
Sbjct: 5 tactccctctgtcccatattaattgtctcgaatttgtccaaatata 50
>RF00906;MIR1122;FJ477093.1/40908-41001 4513:Hordeum vulgare
Length = 94
Score = 50.1 bits (25), Expect = 8e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 10 tatactccctctgtcccatattaagtgactcaa 42
|||||||||||||||||| | ||||||||||||
Sbjct: 3 tatactccctctgtcccaaaataagtgactcaa 35
Score = 50.1 bits (25), Expect = 8e-06
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 12 tactccctctgtcccatattaagtgactcaaatttat 48
||||||||| |||||| |||||||||||||| |||||
Sbjct: 90 tactccctccgtcccaaattaagtgactcaactttat 54
>RF00906;MIR1122;EU730895.1/43836-43713 15368:Brachypodium
distachyon
Length = 124
Score = 48.1 bits (24), Expect = 3e-05
Identities = 34/36 (94%), Gaps = 1/36 (2%)
Strand = Plus / Plus
Query: 11 atactccctctgtcccatattaagtgactcaaattt 46
||||||||||||||| |||||||||| |||||||||
Sbjct: 4 atactccctctgtcc-atattaagtgtctcaaattt 38
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 104 ttaatatgggacggagggagta 125
||||||||||||||||||||||
Sbjct: 99 ttaatatgggacggagggagta 120
>RF00906;MIR1122;AB239678.1/2131-2247 52163:Triticum monococcum
subsp. aegilopoides
Length = 117
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 12 tactccctctgtcccatattaagtgactcaa 42
||||||||| |||||| ||||||||||||||
Sbjct: 5 tactccctccgtcccaaattaagtgactcaa 35
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 12 tactccctctgtcccatattaagtgactcaa 42
||||||||| |||||| ||||||||||||||
Sbjct: 113 tactccctccgtcccaaattaagtgactcaa 83
>RF00906;MIR1122;AJ507395.1/7785-7899 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 115
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 9 ttatactccctctgtcccatattaagtgactcaaa 43
||||| ||||||||||||| | |||||||||||||
Sbjct: 2 ttataatccctctgtcccaaaataagtgactcaaa 36
>RF00906;MIR1122;AF521177.1/81577-81474 4513:Hordeum vulgare
Length = 104
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 8 attatactccctctgtcccatattaagtgactcaa 42
||||||||||||| |||||| | ||||||||||||
Sbjct: 104 attatactccctccgtcccaaaataagtgactcaa 70
>RF00906;MIR1122;ABRL01002629.1/2739-2591 65489:Oryza barthii
Length = 149
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 tatactccctctgtcccatatta 32
|||||||||||||||||||||||
Sbjct: 3 tatactccctctgtcccatatta 25
>RF00906;MIR1122;AK252095.1/1820-1925 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 106
Score = 44.1 bits (22), Expect = 5e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 11 atactccctctgtcccatattaagtgactcaaatttat 48
||||||||||||||||| | |||||| | |||||||||
Sbjct: 103 atactccctctgtcccaaaataagtgtcacaaatttat 66
>RF00906;MIR1122;EF059989.1/159537-159414 29664:Brachypodium
sylvaticum
Length = 124
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 12 tactccctctgtcccatattaagtgactcaaatt 45
||||||||| ||| |||||||||||| |||||||
Sbjct: 5 tactccctccgtctcatattaagtgattcaaatt 38
>RF00906;MIR1122;AAAA02007310.1/1161-1273 39946:Oryza sativa Indica
Group
Length = 113
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 108 tatgggacggagggagtagatc 129
||||||||||||||||||||||
Sbjct: 22 tatgggacggagggagtagatc 1
>RF00906;MIR1122;AAAA02023828.1/150-266 39946:Oryza sativa Indica
Group
Length = 117
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 105 taatatgggacggagggagtag 126
||||||||||||||||||||||
Sbjct: 25 taatatgggacggagggagtag 4
>RF00906;MIR1122;AP003335.4/28125-28259 39947:Oryza sativa
Japonica Group
Length = 135
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 attatactccctctgtcccata 29
||||||||||||||||||||||
Sbjct: 1 attatactccctctgtcccata 22
