miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;FJ234838.1/106075-106199 29664:Brachypodium
sylvaticum
Length = 125
Score = 149 bits (75), Expect = 1e-35
Identities = 102/111 (91%)
Strand = Plus / Minus
Query: 10 gtactccctccgtctcataataagtgactttctattacacgtatctagacgctttttaga 69
|||||||||||||| |||| ||| ||||||||||||||| ||||||||||||||||||
Sbjct: 122 gtactccctccgtcccatattaattgactttctattacatgtatctagacgctttttaag 63
Query: 70 cataaatacatccatattttgacaaatttgagtcacttaatatggtacgga 120
|||| |||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct: 62 catagatacatccatatttggacaaatttgagtcacttaatatgggacgga 12
>RF00906;MIR1122;EF059989.1/56206-56082 29664:Brachypodium
sylvaticum
Length = 125
Score = 149 bits (75), Expect = 1e-35
Identities = 96/103 (93%)
Strand = Plus / Plus
Query: 11 tactccctccgtctcataataagtgactttctattacacgtatctagacgctttttagac 70
||||||||||||| | || ||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 5 tactccctccgtcccgtattaagtgactttctattacatgtatctagacactttttagac 64
Query: 71 ataaatacatccatattttgacaaatttgagtcacttaatatg 113
||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 65 atagatacatccatatttggacaaatttgagtcacttaatatg 107
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 11 tactccctccgtctcataataagtgact 38
|||||||||||||||||| |||||||||
Sbjct: 121 tactccctccgtctcatattaagtgact 94
>RF00906;MIR1122;EF059989.1/24895-24770 29664:Brachypodium
sylvaticum
Length = 126
Score = 117 bits (59), Expect = 4e-26
Identities = 99/111 (89%), Gaps = 1/111 (0%)
Strand = Plus / Plus
Query: 11 tactccctccgtctcataataagtgactttctattacacgtatctagacgctttttag-a 69
||||||||||||| || | ||||||||||||||||||| ||||||||||| ||| ||| |
Sbjct: 5 tactccctccgtcccaaattaagtgactttctattacatgtatctagacgttttctagta 64
Query: 70 cataaatacatccatattttgacaaatttgagtcacttaatatggtacgga 120
||| |||| ||||||||| ||||||||||||||||||||||||| |||||
Sbjct: 65 tatagatacgtccatatttagacaaatttgagtcacttaatatgggacgga 115
>RF00906;MIR1122;EF059989.1/365637-365513 29664:Brachypodium
sylvaticum
Length = 125
Score = 103 bits (52), Expect = 6e-22
Identities = 103/120 (85%)
Strand = Plus / Minus
Query: 11 tactccctccgtctcataataagtgactttctattacacgtatctagacgctttttagac 70
||||||||||||| |||| ||| ||||||||||||||| | |||||||| ||||||| |
Sbjct: 121 tactccctccgtcccatattaaatgactttctattacatgcatctagacattttttaggc 62
Query: 71 ataaatacatccatattttgacaaatttgagtcacttaatatggtacggaagaagtacat 130
||| |||||||||||||| |||||||||||||||||||| | ||||| | |||||||
Sbjct: 61 atagatacatccatatttgattaaatttgagtcacttaatataggacggagggagtacat 2
>RF00906;MIR1122;EU730901.1/58586-58463 15368:Brachypodium
distachyon
Length = 124
Score = 99.6 bits (50), Expect = 9e-21
Identities = 96/110 (87%), Gaps = 1/110 (0%)
Strand = Plus / Minus
Query: 11 tactccctccgtctcataataagtgactttctattacacgtatctagacgctttttagac 70
||||| ||||||| |||| |||||||||| |||||| | ||||||| ||| ||||||| |
Sbjct: 120 tactcgctccgtcccatattaagtgacttcctatta-atgtatctaaacgttttttagcc 62
Query: 71 ataaatacatccatattttgacaaatttgagtcacttaatatggtacgga 120
|| |||||||||||| | ||||||||||||||||||||||||| |||||
Sbjct: 61 atttatacatccatatctggacaaatttgagtcacttaatatgggacgga 12
>RF00906;MIR1122;EU730895.1/43836-43713 15368:Brachypodium
distachyon
Length = 124
Score = 93.7 bits (47), Expect = 6e-19
Identities = 92/107 (85%)
Strand = Plus / Minus
Query: 8 atgtactccctccgtctcataataagtgactttctattacacgtatctagacgcttttta 67
|||||||||||||||| |||| |||||| | ||||||| ||||||||| ||||||||
Sbjct: 123 atgtactccctccgtcccatattaagtgtcgaaatattacatgtatctagatgcttttta 64
Query: 68 gacataaatacatccatattttgacaaatttgagtcacttaatatgg 114
| ||| |||||||||||||| | |||||||||| ||||||||||||
Sbjct: 63 ggtatagatacatccatatttgggcaaatttgagacacttaatatgg 17
>RF00906;MIR1122;EF059989.1/159537-159414 29664:Brachypodium
sylvaticum
Length = 124
Score = 81.8 bits (41), Expect = 2e-15
Identities = 87/101 (86%), Gaps = 1/101 (0%)
Strand = Plus / Minus
Query: 13 ctccctccgtctcataataagtgactttctattacacgtatctagacgctttttagacat 72
|||||||||||||||| |||||||| ||||||| ||||||||||||||||| || ||
Sbjct: 118 ctccctccgtctcatattaagtgacgaaatattacatgtatctagacgcttttt-gatat 60
Query: 73 aaatacatccatattttgacaaatttgagtcacttaatatg 113
| ||||| ||||||| ||| ||||||| ||||||||||||
Sbjct: 59 agatacaatcatatttggacgaatttgaatcacttaatatg 19
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 tactccctccgtctcataataagtga 36
|||||||||||||||||| |||||||
Sbjct: 5 tactccctccgtctcatattaagtga 30
>RF00906;MIR1122;EU730901.1/161594-161470 15368:Brachypodium
distachyon
Length = 125
Score = 75.8 bits (38), Expect = 1e-13
Identities = 74/86 (86%)
Strand = Plus / Minus
Query: 42 tattacacgtatctagacgctttttagacataaatacatccatattttgacaaatttgag 101
||||||| ||||||||||||||||||| |||| |||||||||||| | | ||||||||||
Sbjct: 90 tattacatgtatctagacgctttttaggcatagatacatccatatctgggcaaatttgag 31
Query: 102 tcacttaatatggtacggaagaagta 127
|| || |||||| |||| ||||||
Sbjct: 30 acaattgatatggatcggaggaagta 5
>RF00906;MIR1122;EU730900.1/55128-55253 15368:Brachypodium
distachyon
Length = 126
Score = 71.9 bits (36), Expect = 2e-12
Identities = 70/80 (87%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 42 tattacacgtatctagacgctttttag-acataaatacatccatattttgacaaatttga 100
||||||| ||||||||||| |||||| | ||| |||| ||||| ||| |||||||||||
Sbjct: 36 tattacatgtatctagacgtattttagtatatagatacgtccatttttagacaaatttga 95
Query: 101 gtcacttaatatggtacgga 120
|||||||||||||| |||||
Sbjct: 96 gtcacttaatatgggacgga 115
>RF00906;MIR1122;EU730900.1/18513-18389 15368:Brachypodium
distachyon
Length = 125
Score = 65.9 bits (33), Expect = 1e-10
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 42 tattacacgtatctagacgctttttagacataaatacatccatattttgacaaatttgag 101
||||||| ||||||| ||||||||||| |||| |||||||||||||| | |||||||||
Sbjct: 36 tattacatgtatctaaacgctttttaggcatagatacatccatatttgggaaaatttgag 95
Query: 102 tcacttaatatgg 114
|| || ||||||
Sbjct: 96 acaattgatatgg 108
>RF00906;MIR1122;EF059989.1/156495-156619 29664:Brachypodium
sylvaticum
Length = 125
Score = 63.9 bits (32), Expect = 5e-10
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 42 tattacacgtatctagacgctttttagacataaatacatccatattttgacaaatttgag 101
||||||| |||||||||| ||||||| ||||| |||||| | ||||| ||||||||||||
Sbjct: 36 tattacatgtatctagactctttttacacatagatacattcgtatttggacaaatttgag 95
>RF00906;MIR1122;EF059989.1/55128-55252 29664:Brachypodium
sylvaticum
Length = 125
Score = 61.9 bits (31), Expect = 2e-09
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 42 tattacacgtatctagacgctttttagacataaatacatccatattttgacaaatttgag 101
||||||| |||||||||||||||||| ||| ||| |||||||||| | ||||||||||
Sbjct: 36 tattacatgtatctagacgctttttaagaatagatatatccatatttgggcaaatttgag 95
Query: 102 tca 104
|||
Sbjct: 96 tca 98
>RF00906;MIR1122;EF059989.1/223398-223521 29664:Brachypodium
sylvaticum
Length = 124
Score = 58.0 bits (29), Expect = 3e-08
Identities = 63/73 (86%), Gaps = 1/73 (1%)
Strand = Plus / Minus
Query: 42 tattacacgtatctagacgctttttagacataaatacatccatattttgacaaatttgag 101
||||||| ||||| |||| |||||||| ||||||||||| |||||| |||||||| |||
Sbjct: 89 tattacatgtatccagac-ctttttaggtataaatacatctatatttggacaaattcgag 31
Query: 102 tcacttaatatgg 114
|| |||||||||
Sbjct: 30 acaattaatatgg 18
>RF00906;MIR1122;EF059989.1/52700-52824 29664:Brachypodium
sylvaticum
Length = 125
Score = 58.0 bits (29), Expect = 3e-08
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 42 tattacacgtatctagacgctttttagacataaatacatccatattttgacaaatttgag 101
||||||| |||||||||||||||||| ||||| || ||| | ||||| | ||||||||||
Sbjct: 36 tattacatgtatctagacgctttttaaacatagatgcattcgtatttgggcaaatttgag 95
Query: 102 tcacttaatatgg 114
|| ||||||||
Sbjct: 96 acaagtaatatgg 108
>RF00906;MIR1122;EU730902.1/55282-55158 15368:Brachypodium
distachyon
Length = 125
Score = 56.0 bits (28), Expect = 1e-07
Identities = 52/60 (86%)
Strand = Plus / Minus
Query: 42 tattacacgtatctagacgctttttagacataaatacatccatattttgacaaatttgag 101
||||||| |||||||||||| ||||||| ||| |||||||||| ||| ||||||||||
Sbjct: 90 tattacatgtatctagacgcattttagaaatagatacatccatctttgagcaaatttgag 31
>RF00906;MIR1122;EF059989.1/67137-67261 29664:Brachypodium
sylvaticum
Length = 125
Score = 56.0 bits (28), Expect = 1e-07
Identities = 52/60 (86%)
Strand = Plus / Minus
Query: 42 tattacacgtatctagacgctttttagacataaatacatccatattttgacaaatttgag 101
||||||| ||||||| |||||||||| |||| |||||||||||||| | ||| ||||||
Sbjct: 90 tattacatgtatctaaacgctttttacgcatatatacatccatatttgggcaattttgag 31
>RF00906;MIR1122;EU730902.1/127235-127359 15368:Brachypodium
distachyon
Length = 125
Score = 56.0 bits (28), Expect = 1e-07
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 42 tattacacgtatctagacgctttttagacataaatacatccatattttgacaaatttgag 101
||||||| ||||||||||||||||||| ||| ||||||||| ||| | ||||||||||
Sbjct: 36 tattacatgtatctagacgctttttaggaatagatacatccaattttgggcaaatttgag 95
>RF00906;MIR1122;EF059989.1/222136-222013 29664:Brachypodium
sylvaticum
Length = 124
Score = 56.0 bits (28), Expect = 1e-07
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 42 tattacacgtatctagacgctttttagacataaatacatccatattttgacaaatttgag 101
||||||| |||||||||||| ||||| ||| |||||||||||||| | ||||||||||
Sbjct: 36 tattacatgtatctagacgcgttttaagaatagatacatccatatttgggcaaatttgag 95
>RF00906;MIR1122;EF059989.1/352416-352302 29664:Brachypodium
sylvaticum
Length = 115
Score = 54.0 bits (27), Expect = 5e-07
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 42 tattacacgtatctagacgctttttagacataaatacatccatattt 88
||||||| ||||||||||| |||||| |||| ||||||||||||||
Sbjct: 80 tattacatgtatctagacgttttttatgcatagatacatccatattt 34
>RF00906;MIR1122;FJ236275.1/674-570 4573:Aegilops speltoides
Length = 105
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 8 atgtactccctccgtctcataataagtg 35
||||||||||||||||||| ||||||||
Sbjct: 2 atgtactccctccgtctcaaaataagtg 29
>RF01058;MIR806;AACV01002156.1/2447-2686 39947:Oryza sativa Japonica
Group
Length = 240
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 10 gtactccctccgtctcataata 31
||||||||||||||||||||||
Sbjct: 240 gtactccctccgtctcataata 219
>RF00906;MIR1122;AJ234485.1/114-218 4513:Hordeum vulgare
Length = 105
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 10 gtactccctccgtctcataataagtg 35
||||||||||||||||| ||||||||
Sbjct: 4 gtactccctccgtctcaaaataagtg 29
>RF00906;MIR1122;EF059989.1/222260-222384 29664:Brachypodium
sylvaticum
Length = 125
Score = 44.1 bits (22), Expect = 5e-04
Identities = 46/54 (85%)
Strand = Plus / Minus
Query: 44 ttacacgtatctagacgctttttagacataaatacatccatattttgacaaatt 97
||||| ||||||||||| |||||| ||| |||||||||| ||| ||||||||
Sbjct: 88 ttacatgtatctagacgttttttatgaatatatacatccatttttggacaaatt 35
