miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AACV01013085.1/19238-19395 39947:Oryza sativa
Japonica Group
Length = 158
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 14 ctactccctccgttccataatatag 38
|||||||||||||||||||||||||
Sbjct: 4 ctactccctccgttccataatatag 28
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 14 ctactccctccgttccataatatag 38
|||||||||||||||||||||||||
Sbjct: 155 ctactccctccgttccataatatag 131
>RF00906;MIR1122;AAAA02000094.1/16089-15933 39946:Oryza sativa
Indica Group
Length = 157
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 14 ctactccctccgttccataatatag 38
|||||||||||||||||||||||||
Sbjct: 4 ctactccctccgttccataatatag 28
>RF00906;MIR1122;AK248893.1/1282-1190 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 14 ctactccctccgttccataatata 37
||||||||||||||||||||||||
Sbjct: 4 ctactccctccgttccataatata 27
>RF00906;MIR1122;AAAA02007333.1/13137-13002 39946:Oryza sativa
Indica Group
Length = 136
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 14 ctactccctccgttccataatata 37
||||||||||||||||||||||||
Sbjct: 133 ctactccctccgttccataatata 110
>RF01058;MIR806;AP005184.5/84409-84174 39947:Oryza sativa Japonica
Group
Length = 236
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 tactccctccgttccataatata 37
|||||||||||||||||||||||
Sbjct: 2 tactccctccgttccataatata 24
>RF01058;MIR806;AP003960.2/91001-90759 39947:Oryza sativa Japonica
Group
Length = 243
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 tactccctccgttccataatata 37
|||||||||||||||||||||||
Sbjct: 2 tactccctccgttccataatata 24
>RF00906;MIR1122;AY663391.1/33436-33528 4571:Triticum turgidum
Length = 93
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 ctactccctccgttccataatatagga 40
||||||||||||| |||||||||||||
Sbjct: 4 ctactccctccgtcccataatatagga 30
>RF00906;MIR1122;AAAA02012907.1/4650-4807 39946:Oryza sativa
Indica Group
Length = 158
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 tactccctccgttccataatata 37
|||||||||||||||||||||||
Sbjct: 5 tactccctccgttccataatata 27
>RF00906;MIR1122;AAAA02001985.1/22841-22997 39946:Oryza sativa
Indica Group
Length = 157
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 11 ctactactccctccgttccataatata 37
|||||||||||||||| ||||||||||
Sbjct: 1 ctactactccctccgtcccataatata 27
>RF00906;MIR1122;AP008209.1/2115790-2115631 39947:Oryza sativa
Japonica Group
Length = 160
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 12 tactactccctccgttccataatatag 38
||||||||||||| |||||||||||||
Sbjct: 159 tactactccctccattccataatatag 133
>RF00906;MIR1122;AAAA02009816.1/6724-6859 39946:Oryza sativa Indica
Group
Length = 136
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 14 ctactccctccgttccataatat 36
|||||||||||||||||||||||
Sbjct: 133 ctactccctccgttccataatat 111
>RF00906;MIR1122;AACV01009198.1/25225-25351 39947:Oryza sativa
Japonica Group
Length = 127
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 tactccctccgttccataatata 37
|||||||||||||||||||||||
Sbjct: 5 tactccctccgttccataatata 27
>RF00906;MIR1122;AAAA02003905.1/26512-26644 39946:Oryza sativa
Indica Group
Length = 133
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 tactactccctccgttccataatatag 38
||||||||||||||||||| |||||||
Sbjct: 2 tactactccctccgttccaaaatatag 28
>RF00906;MIR1122;AP008214.1/337131-337286 39947:Oryza sativa
Japonica Group
Length = 156
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 12 tactactccctccgttccataatatag 38
||||||||||||||| |||||||||||
Sbjct: 155 tactactccctccgtcccataatatag 129
>RF00906;MIR1122;AP004031.3/125858-125981 39947:Oryza sativa
Japonica Group
Length = 124
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 11 ctactactccctccgttccataatata 37
|||||||||||||||| ||||||||||
Sbjct: 124 ctactactccctccgtcccataatata 98
>RF00906;MIR1122;AP002485.2/92019-92165 39947:Oryza sativa
Japonica Group
Length = 147
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 tactactccctccgttccataatatag 38
||||||||||||||| |||||||||||
Sbjct: 2 tactactccctccgtcccataatatag 28
>RF00906;MIR1122;ABXC01000415.1/124553-124445 4558:Sorghum bicolor
(sorghum)
Length = 109
Score = 44.1 bits (22), Expect = 4e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 12 tactactccctccgttccataatataggacgatttggc 49
||||||||||||||||||| | |||| |||| ||||||
Sbjct: 108 tactactccctccgttccaaattataagacgttttggc 71
>RF00906;MIR1122;AF459639.1/39710-39600 4568:Triticum monococcum
Length = 111
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 13 actactccctccgttccataatataggacg 42
|||||||||||||| ||||||| |||||||
Sbjct: 109 actactccctccgtcccataatgtaggacg 80
>RF00906;MIR1122;EU730901.1/108914-109038 15368:Brachypodium
distachyon
Length = 125
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 actactccctccgttccataat 34
||||||||||||||||||||||
Sbjct: 3 actactccctccgttccataat 24
>RF00906;MIR1122;AAAA02029602.1/21868-22024 39946:Oryza sativa
Indica Group
Length = 157
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 12 tactactccctccgttccataatata 37
||||||||||||||| ||||||||||
Sbjct: 156 tactactccctccgtcccataatata 131
>RF00906;MIR1122;AAAA02008915.1/13725-13567 39946:Oryza sativa
Indica Group
Length = 159
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 13 actactccctccgttccataatatag 38
|||||||||||||| |||||||||||
Sbjct: 157 actactccctccgtcccataatatag 132
>RF00906;MIR1122;AP002869.1/81681-81526 39947:Oryza sativa
Japonica Group
Length = 156
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tactccctccgttccataatat 36
||||||||||||||||||||||
Sbjct: 5 tactccctccgttccataatat 26
>RF00906;MIR1122;AAAA02001357.1/661-786 39946:Oryza sativa Indica
Group
Length = 126
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tactccctccgttccataatat 36
||||||||||||||||||||||
Sbjct: 5 tactccctccgttccataatat 26
>RF00906;MIR1122;AC027658.1/92773-92617 39947:Oryza sativa
Japonica Group
Length = 157
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 12 tactactccctccgttccataatata 37
||||||||||||||| ||||||||||
Sbjct: 2 tactactccctccgtcccataatata 27
>RF00906;MIR1122;AP008207.1/1012082-1012198 39947:Oryza sativa
Japonica Group
Length = 117
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 12 tactactccctccgttccataatata 37
||||||||||||||| ||||||||||
Sbjct: 116 tactactccctccgtcccataatata 91
>RF00906;MIR1122;AACV01018737.1/24214-24370 39947:Oryza sativa
Japonica Group
Length = 157
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 12 tactactccctccgttccataatata 37
||||||||||||||| ||||||||||
Sbjct: 2 tactactccctccgtcccataatata 27
