miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00247;mir-160;AC183492.1/98297-98383 3712:Brassica oleracea
Length = 87
Score = 103 bits (52), Expect = 4e-22
Identities = 76/84 (90%)
Strand = Plus / Plus
Query: 12 tgcctggctccctgtataccacaagcaaacaccgatctcattatgaaatcgatcgctagt 71
||||||||||||||||| ||||||| ||| ||||||||||||||||||||| | |||||
Sbjct: 4 tgcctggctccctgtatgccacaagtaaataccgatctcattatgaaatcggacactagt 63
Query: 72 ggtgtatagagtagtcaagcatga 95
|| ||| |||||||||||||||||
Sbjct: 64 ggcgtacagagtagtcaagcatga 87
>RF00247;mir-160;Z97344.2/54320-54406 3702:Arabidopsis thaliana
(thale cress)
Length = 87
Score = 77.8 bits (39), Expect = 2e-14
Identities = 75/87 (86%)
Strand = Plus / Plus
Query: 9 tcgtgcctggctccctgtataccacaagcaaacaccgatctcattatgaaatcgatcgct 68
|||||||||||||||||||| ||||||| ||||| |||| | || ||||||||| ||
Sbjct: 1 tcgtgcctggctccctgtatgccacaagaaaacatcgatttagtttcaaaatcgatcact 60
Query: 69 agtggtgtatagagtagtcaagcatga 95
||||| ||| |||||||||||||||||
Sbjct: 61 agtggcgtacagagtagtcaagcatga 87
>RF00247;mir-160;AARH01000886.1/36098-36187 3694:Populus
trichocarpa
Length = 90
Score = 52.0 bits (26), Expect = 1e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 12 tgcctggctccctgtataccacaagcaaacaccgatct 49
||||||||||||||||| ||||||||||| ||| ||||
Sbjct: 4 tgcctggctccctgtatgccacaagcaaagaccaatct 41
>RF00247;mir-160;ABIM01022486.1/4654-4741 3649:Carica papaya
(papaya)
Length = 88
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 tgcctggctccctgtataccacaagca 38
||||||||||||||||| |||||||||
Sbjct: 4 tgcctggctccctgtatgccacaagca 30
>RF00247;mir-160;AASG02024242.1/1209-1298 3988:Ricinus communis
(castor bean)
Length = 90
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 12 tgcctggctccctgtataccacaagc 37
||||||||||||||||| ||||||||
Sbjct: 4 tgcctggctccctgtatgccacaagc 29
