miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00920;MIR444;AK249841.1/242-414 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 173
Score = 151 bits (76), Expect = 4e-36
Identities = 153/179 (85%), Gaps = 6/179 (3%)
Strand = Plus / Plus
Query: 5 cgcatgcggcggcaccaagcatgaggcgacaactgcattacttgctgggaagacgcaagt 64
|||||| |||||||||||||||||||| ||||||||| |||||| |||||| | |||||
Sbjct: 1 cgcatgtggcggcaccaagcatgaggcaacaactgcagtacttgtggggaaggcacaagt 60
Query: 65 atgacagcgagacatgcattacttgcgggaaaggcgcaaaacgaatagaagatcatcata 124
| |||| | | |||||| ||| | ||| ||||||| ||||||| |||| ||||
Sbjct: 61 aggacaccaa------cattacctgcaagcaagacgcaaaattaatagaacatcaccata 114
Query: 125 cttgtggctttcttgcaagttgtgcagttgctgcctcaagcttgctgcctccctttgcc 183
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 115 cttgtggctttcttgcaagtcgtgcagttgctgcctcaagcttgctgcctccctttgcc 173
>RF00920;MIR444;EU947901.1/68-234 4577:Zea mays
Length = 167
Score = 121 bits (61), Expect = 4e-27
Identities = 64/65 (98%)
Strand = Plus / Plus
Query: 119 atcatacttgtggctttcttgcaagttgtgcagttgctgcctcaagcttgctgcctccct 178
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 103 atcatacttgtggctttcttgcaagttgtgcagttgttgcctcaagcttgctgcctccct 162
Query: 179 ttgcc 183
|||||
Sbjct: 163 ttgcc 167
>RF00920;MIR444;EU971312.1/141-369 4577:Zea mays
Length = 229
Score = 101 bits (51), Expect = 3e-21
Identities = 54/55 (98%)
Strand = Plus / Plus
Query: 119 atcatacttgtggctttcttgcaagttgtgcagttgctgcctcaagcttgctgcc 173
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 175 atcatacttgtggctttcttgcaagttgtgcagttgttgcctcaagcttgctgcc 229
Score = 50.1 bits (25), Expect = 1e-05
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 125 cttgtggctttcttgcaagttgtgcagttgctgcctcaagcttgctgcc 173
|||||| ||||||||||||| ||||||| |||||||| ||||| ||||
Sbjct: 49 cttgtgactttcttgcaagtaatgcagttcctgcctcatgcttggtgcc 1
Score = 46.1 bits (23), Expect = 2e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 15 ggcaccaagcatgaggcgacaactgcattacttgc 49
||||||||||||||||| |||||||||||||||
Sbjct: 1 ggcaccaagcatgaggcaggaactgcattacttgc 35
>RF00920;MIR444;BT038959.1/401-528 4577:Zea mays
Length = 128
Score = 85.7 bits (43), Expect = 2e-16
Identities = 49/51 (96%)
Strand = Plus / Plus
Query: 133 tttcttgcaagttgtgcagttgctgcctcaagcttgctgcctccctttgcc 183
|||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 78 tttcttgcaagttgtgcagttgttgtctcaagcttgctgcctccctttgcc 128
Score = 44.1 bits (22), Expect = 7e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 133 tttcttgcaagttgtgcagttgctgcctcaagct 166
||||||||||| | ||||||||||||||| ||||
Sbjct: 51 tttcttgcaagatatgcagttgctgcctctagct 18
>RF00920;MIR444;BT065873.1/353-482 4577:Zea mays
Length = 130
Score = 85.7 bits (43), Expect = 2e-16
Identities = 49/51 (96%)
Strand = Plus / Plus
Query: 133 tttcttgcaagttgtgcagttgctgcctcaagcttgctgcctccctttgcc 183
|||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 80 tttcttgcaagttgtgcagttgttgtctcaagcttgctgcctccctttgcc 130
Score = 58.0 bits (29), Expect = 5e-08
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 133 tttcttgcaagttgtgcagttgctgcctcaagcttgctgcc 173
||||||||||| | ||||||||||||||| |||||||||||
Sbjct: 51 tttcttgcaaggtatgcagttgctgcctctagcttgctgcc 11
>RF00920;MIR444;EU971967.1/288-421 4577:Zea mays
Length = 134
Score = 81.8 bits (41), Expect = 3e-15
Identities = 44/45 (97%)
Strand = Plus / Plus
Query: 139 gcaagttgtgcagttgctgcctcaagcttgctgcctccctttgcc 183
||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 90 gcaagttatgcagttgctgcctcaagcttgctgcctccctttgcc 134
>RF00920;MIR444;EU948115.1/123-251 4577:Zea mays
Length = 129
Score = 81.8 bits (41), Expect = 3e-15
Identities = 47/49 (95%)
Strand = Plus / Plus
Query: 135 tcttgcaagttgtgcagttgctgcctcaagcttgctgcctccctttgcc 183
||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 81 tcttgcaagttatgcagttgctgcctcaagcttcctgcctccctttgcc 129
>RF00920;MIR444;CU406550.1/236-400 4529:Oryza rufipogon
Length = 165
Score = 81.8 bits (41), Expect = 3e-15
Identities = 44/45 (97%)
Strand = Plus / Plus
Query: 132 ctttcttgcaagttgtgcagttgctgcctcaagcttgctgcctcc 176
||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 114 ctttcttgcaagttgtgcagttgttgcctcaagcttgctgcctcc 158
Score = 54.0 bits (27), Expect = 7e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 15 ggcaccaagcatgaggcgacaactgcattacttgc 49
|||||||||||||||| |||||||||||||||||
Sbjct: 11 ggcaccaagcatgaggttacaactgcattacttgc 45
>RF00920;MIR444;AK063114.1/148-276 39947:Oryza sativa Japonica Group
Length = 129
Score = 77.8 bits (39), Expect = 5e-14
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 134 ttcttgcaagttgtgcagttgctgcctcaagcttgctgcctcc 176
|||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 80 ttcttgcaagttatgcagttgctgcctcaagcttgctgcctcc 122
>RF00920;MIR444;AK066992.1/189-316 39947:Oryza sativa Japonica Group
Length = 128
Score = 77.8 bits (39), Expect = 5e-14
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 133 tttcttgcaagttgtgcagttgctgcctcaagcttgctgcctccctttgcc 183
||||||||||| |||||||||| || |||||||||||||||||||||||||
Sbjct: 78 tttcttgcaagctgtgcagttgttgtctcaagcttgctgcctccctttgcc 128
Score = 48.1 bits (24), Expect = 4e-05
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 133 tttcttgcaagttgtgcagttgctgcctcaagcttgctgcctcc 176
||||||||||| | ||||||||||| ||| ||||||| ||||||
Sbjct: 51 tttcttgcaagatatgcagttgctgtctctagcttgccgcctcc 8
>RF00920;MIR444;ABXC01002896.1/41660-41790 4558:Sorghum bicolor
(sorghum)
Length = 131
Score = 54.0 bits (27), Expect = 7e-07
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 123 tacttgtggctttcttgcaagttgtgcagttgctgcctcaagcttgctgcc 173
|||||||| ||||||||||||| ||||||| |||||||| ||||| ||||
Sbjct: 61 tacttgtgactttcttgcaagtaatgcagttcctgcctcatgcttggtgcc 11
Score = 46.1 bits (23), Expect = 2e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 15 ggcaccaagcatgaggcgacaactgcattacttgc 49
||||||||||||||||| |||||||||||||||
Sbjct: 11 ggcaccaagcatgaggcaggaactgcattacttgc 45
