miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU730900.1/55128-55253 15368:Brachypodium
distachyon
Length = 126
Score = 151 bits (76), Expect = 3e-36
Identities = 110/120 (91%), Gaps = 1/120 (0%)
Strand = Plus / Plus
Query: 11 aatactccttccgtcccatattaagtgtcgaaatattgcatgtatcta-acgtattttaa 69
|||||||| ||||||||||||||||| |||||||||| |||||||||| ||||||||||
Sbjct: 3 aatactccctccgtcccatattaagtttcgaaatattacatgtatctagacgtattttag 62
Query: 70 tatatagatacgtccatatttaaacaaattcgagttacttaatatgagacggagggagta 129
||||||||||||||||| |||| ||||||| |||| |||||||||| |||||||||||||
Sbjct: 63 tatatagatacgtccatttttagacaaatttgagtcacttaatatgggacggagggagta 122
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 9 taaatactccttccgtcccatattaagtg 37
|||||||||| ||||||||||||||||||
Sbjct: 126 taaatactccctccgtcccatattaagtg 98
>RF00906;MIR1122;EU730895.1/70118-69993 15368:Brachypodium
distachyon
Length = 126
Score = 107 bits (54), Expect = 4e-23
Identities = 103/118 (87%), Gaps = 1/118 (0%)
Strand = Plus / Plus
Query: 13 tactccttccgtcccatattaagtgtcgaaatattgcatgtatctaa-cgtattttaata 71
|||||| |||||||||||||||||| ||||||||| |||||||||| | ||||||| ||
Sbjct: 5 tactccctccgtcccatattaagtgccgaaatattatatgtatctaaacatattttagta 64
Query: 72 tatagatacgtccatatttaaacaaattcgagttacttaatatgagacggagggagta 129
||||||||||| ||| |||| ||||||| ||| |||||||||| || ||||||||||
Sbjct: 65 tatagatacgtacatttttagacaaatttaagtcacttaatatgggatggagggagta 122
>RF00906;MIR1122;EF059989.1/24895-24770 29664:Brachypodium
sylvaticum
Length = 126
Score = 107 bits (54), Expect = 4e-23
Identities = 106/122 (86%), Gaps = 1/122 (0%)
Strand = Plus / Plus
Query: 10 aaatactccttccgtcccatattaagtgtcgaaatattgcatgtatcta-acgtatttta 68
||||||||| ||||||||| |||||||| | |||| |||||||||| |||| || ||
Sbjct: 2 aaatactccctccgtcccaaattaagtgactttctattacatgtatctagacgttttcta 61
Query: 69 atatatagatacgtccatatttaaacaaattcgagttacttaatatgagacggagggagt 128
|||||||||||||||||||||| ||||||| |||| |||||||||| ||||||||||||
Sbjct: 62 gtatatagatacgtccatatttagacaaatttgagtcacttaatatgggacggagggagt 121
Query: 129 ag 130
||
Sbjct: 122 ag 123
>RF00906;MIR1122;EU730895.1/43836-43713 15368:Brachypodium
distachyon
Length = 124
Score = 75.8 bits (38), Expect = 1e-13
Identities = 44/46 (95%)
Strand = Plus / Minus
Query: 13 tactccttccgtcccatattaagtgtcgaaatattgcatgtatcta 58
|||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct: 120 tactccctccgtcccatattaagtgtcgaaatattacatgtatcta 75
>RF00906;MIR1122;EF059989.1/56206-56082 29664:Brachypodium
sylvaticum
Length = 125
Score = 73.8 bits (37), Expect = 6e-13
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 73 atagatacgtccatatttaaacaaattcgagttacttaatatgagacggagggagta 129
|||||||| ||||||||| ||||||| |||| ||||||||||||||||||||||||
Sbjct: 65 atagatacatccatatttggacaaatttgagtcacttaatatgagacggagggagta 121
>RF00906;MIR1122;FJ234838.1/106075-106199 29664:Brachypodium
sylvaticum
Length = 125
Score = 65.9 bits (33), Expect = 1e-10
Identities = 51/57 (89%)
Strand = Plus / Minus
Query: 73 atagatacgtccatatttaaacaaattcgagttacttaatatgagacggagggagta 129
|||||||| ||||||||| ||||||| |||| |||||||||| |||||||||||||
Sbjct: 61 atagatacatccatatttggacaaatttgagtcacttaatatgggacggagggagta 5
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 10 aaatactccttccgtcccatattaagtg 37
||||||||| ||||||||||||||||||
Sbjct: 2 aaatactccctccgtcccatattaagtg 29
>RF00906;MIR1122;EF059989.1/159537-159414 29664:Brachypodium
sylvaticum
Length = 124
Score = 65.9 bits (33), Expect = 1e-10
Identities = 97/116 (83%), Gaps = 3/116 (2%)
Strand = Plus / Minus
Query: 15 ctccttccgtcccatattaagtgtcgaaatattgcatgtatcta-acgtattttaatata 73
|||| |||||| ||||||||||| ||||||||| |||||||||| ||| |||| |||
Sbjct: 118 ctccctccgtctcatattaagtgacgaaatattacatgtatctagacgcttttt--gata 61
Query: 74 tagatacgtccatatttaaacaaattcgagttacttaatatgagacggagggagta 129
||||||| ||||||| || |||| || | ||||||||||||||||||||||||
Sbjct: 60 tagatacaatcatatttggacgaatttgaatcacttaatatgagacggagggagta 5
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 106 acttaatatgagacggagggag 127
||||||||||||||||||||||
Sbjct: 97 acttaatatgagacggagggag 118
>RF00906;MIR1122;EF059989.1/74343-74464 29664:Brachypodium
sylvaticum
Length = 122
Score = 56.0 bits (28), Expect = 1e-07
Identities = 94/111 (84%), Gaps = 5/111 (4%)
Strand = Plus / Minus
Query: 20 tccgtcccatattaagtgtcgaaatattgcatgtatcta-acgtattttaatatatagat 78
||||||| |||||||||||| ||| ||| |||||||||| |||| |||||| |||||||
Sbjct: 111 tccgtcctatattaagtgtcaaaacattacatgtatctagacgttttttaa-ctatagat 53
Query: 79 acgtccatatttaaacaaattcgagttacttaatatgagacggagggagta 129
|| ||||| ||||| ||||| ||| |||||| ||| |||||||||||||
Sbjct: 52 acatccatgtttaa--aaatttgagacacttaacatg-gacggagggagta 5
>RF00906;MIR1122;EU730894.1/121201-121325 15368:Brachypodium
distachyon
Length = 125
Score = 54.0 bits (27), Expect = 5e-07
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 12 atactccttccgtcccatattaagtgtcgaaatattgcatgtatcta 58
||||||| |||| ||||||||| |||||||||||| ||||||||||
Sbjct: 122 atactccctccgacccatattacttgtcgaaatattacatgtatcta 76
>RF00906;MIR1122;EF059989.1/223398-223521 29664:Brachypodium
sylvaticum
Length = 124
Score = 52.0 bits (26), Expect = 2e-06
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 11 aatactccttccgtcccatattaagtgtcgaaatattgcatgtatc 56
|||||| | ||||| ||||||||| |||||||||||| ||||||||
Sbjct: 122 aatacttcctccgttccatattaattgtcgaaatattacatgtatc 77
>RF00906;MIR1122;EF059989.1/365637-365513 29664:Brachypodium
sylvaticum
Length = 125
Score = 50.1 bits (25), Expect = 8e-06
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 73 atagatacgtccatatttaaacaaattcgagttacttaatatgagacggagggagta 129
|||||||| ||||||||| | ||||| |||| ||||||||| |||||||||||||
Sbjct: 61 atagatacatccatatttgattaaatttgagtcacttaatataggacggagggagta 5
>RF00906;MIR1122;EU730902.1/94507-94383 15368:Brachypodium
distachyon
Length = 125
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 36 tgtcgaaatattgcatgtatctaa 59
||||||||||||||||||||||||
Sbjct: 98 tgtcgaaatattgcatgtatctaa 75
>RF00906;MIR1122;EU730900.1/18513-18389 15368:Brachypodium
distachyon
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 13 tactccttccgtcccatattaagtgtcgaaatattgcatgtatctaa 59
|||||| |||| ||||||||| |||| ||||||| |||||||||||
Sbjct: 5 tactccctccgatccatattaattgtcaaaatattacatgtatctaa 51
>RF00906;MIR1122;EU730895.1/40339-40463 15368:Brachypodium
distachyon
Length = 125
Score = 44.1 bits (22), Expect = 5e-04
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 13 tactccttccgtcccatattaagtgtcgaaatattgcatgtatcta 58
|||||| |||| ||||||||| |||||||||||| ||| ||||||
Sbjct: 5 tactccctccgacccatattacttgtcgaaatattacatttatcta 50
>RF00906;MIR1122;EU730901.1/161594-161470 15368:Brachypodium
distachyon
Length = 125
Score = 44.1 bits (22), Expect = 5e-04
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 13 tactccttccgtcccatattaagtgtcgaaatattgcatgtatcta 58
|||||| |||| |||||||| |||||||||||| ||||||||||
Sbjct: 121 tactccctccgatccatattagttgtcgaaatattacatgtatcta 76
