miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;FJ234838.1/106075-106199 29664:Brachypodium
sylvaticum
Length = 125
Score = 77.8 bits (39), Expect = 4e-14
Identities = 98/119 (82%), Gaps = 9/119 (7%)
Strand = Plus / Minus
Query: 22 gtactccctccgtaccatattaagtgactttctatta---------agacgctatttagg 72
||||||||||||| ||||||||| ||||||||||||| ||||||| |||| |
Sbjct: 122 gtactccctccgtcccatattaattgactttctattacatgtatctagacgctttttaag 63
Query: 73 catgaataaatccatatttggataaatttgattcaattaatatgagactgagggagtat 131
||| ||| ||||||||||||| |||||||| ||| |||||||| ||| ||||||||||
Sbjct: 62 catagatacatccatatttggacaaatttgagtcacttaatatgggacggagggagtat 4
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 23 tactccctccgtaccatattaagtgact 50
|||||||||||| |||||||||||||||
Sbjct: 5 tactccctccgtcccatattaagtgact 32
>RF00906;MIR1122;EF059989.1/56206-56082 29664:Brachypodium
sylvaticum
Length = 125
Score = 73.8 bits (37), Expect = 6e-13
Identities = 96/117 (82%), Gaps = 9/117 (7%)
Strand = Plus / Plus
Query: 23 tactccctccgtaccatattaagtgactttctatta---------agacgctatttaggc 73
|||||||||||| || |||||||||||||||||||| |||| || ||||| |
Sbjct: 5 tactccctccgtcccgtattaagtgactttctattacatgtatctagacactttttagac 64
Query: 74 atgaataaatccatatttggataaatttgattcaattaatatgagactgagggagta 130
|| ||| ||||||||||||| |||||||| ||| |||||||||||| |||||||||
Sbjct: 65 atagatacatccatatttggacaaatttgagtcacttaatatgagacggagggagta 121
>RF00906;MIR1122;EF059989.1/365637-365513 29664:Brachypodium
sylvaticum
Length = 125
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 23 tactccctccgtaccatattaagtgactttctatta 58
|||||||||||| ||||||||| |||||||||||||
Sbjct: 121 tactccctccgtcccatattaaatgactttctatta 86
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 21 tgtactccctccgtaccatattaagtgact 50
|||||||||||||| | |||||||||||||
Sbjct: 3 tgtactccctccgtcctatattaagtgact 32
>RF00906;MIR1122;EF059989.1/24895-24770 29664:Brachypodium
sylvaticum
Length = 126
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 23 tactccctccgtaccatattaagtgactttctatta 58
|||||||||||| ||| |||||||||||||||||||
Sbjct: 5 tactccctccgtcccaaattaagtgactttctatta 40
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 23 tactccctccgtaccatattaagtgact 50
|||||||||||| |||||||||||||||
Sbjct: 122 tactccctccgtcccatattaagtgact 95
>RF00906;MIR1122;EF059989.1/159537-159414 29664:Brachypodium
sylvaticum
Length = 124
Score = 52.0 bits (26), Expect = 2e-06
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 85 catatttggataaatttgattcaattaatatgagactgagggagta 130
|||||||||| ||||||| ||| |||||||||||| |||||||||
Sbjct: 50 catatttggacgaatttgaatcacttaatatgagacggagggagta 5
>RF00906;MIR1122;EU730901.1/58586-58463 15368:Brachypodium
distachyon
Length = 124
Score = 50.1 bits (25), Expect = 9e-06
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 23 tactccctccgtaccatattaagtgactttctattaa 59
||||| |||||| |||||||||||||||| |||||||
Sbjct: 120 tactcgctccgtcccatattaagtgacttcctattaa 84
>RF00906;MIR1122;EU730900.1/55128-55253 15368:Brachypodium
distachyon
Length = 126
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 23 tactccctccgtaccatattaagtgact 50
|||||||||||| |||||||||||||||
Sbjct: 122 tactccctccgtcccatattaagtgact 95
>RF00906;MIR1122;EF059989.1/223398-223521 29664:Brachypodium
sylvaticum
Length = 124
Score = 48.1 bits (24), Expect = 3e-05
Identities = 54/64 (84%)
Strand = Plus / Minus
Query: 67 tttaggcatgaataaatccatatttggataaatttgattcaattaatatgagactgaggg 126
|||||| || |||| ||| ||||||||| ||||| || ||||||||||| ||| |||||
Sbjct: 68 tttaggtataaatacatctatatttggacaaattcgagacaattaatatgggacagaggg 9
Query: 127 agta 130
||||
Sbjct: 8 agta 5
>RF00906;MIR1122;EU730895.1/43836-43713 15368:Brachypodium
distachyon
Length = 124
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 21 tgtactccctccgtaccatattaagtg 47
|||||||||||||| ||||||||||||
Sbjct: 122 tgtactccctccgtcccatattaagtg 96
>RF00906;MIR1122;EU730895.1/70118-69993 15368:Brachypodium
distachyon
Length = 126
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 21 tgtactccctccgtaccatattaagtg 47
|||||||||||||| ||||||||||||
Sbjct: 3 tgtactccctccgtcccatattaagtg 29
