miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00695;MIR398;AC189227.2/79561-79445 51351:Brassica rapa subsp.
pekinensis
Length = 117
Score = 232 bits (117), Expect = 9e-61
Identities = 117/117 (100%)
Strand = Plus / Plus
Query: 4 aggatctcgacagggtcgatatgagaacacatgtgcaatcaacggctgtaatgacgccac 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aggatctcgacagggtcgatatgagaacacatgtgcaatcaacggctgtaatgacgccac 60
Query: 64 atcattataacacatctgtcttttcatgtgttctcaggtcacccctgctgagctcct 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atcattataacacatctgtcttttcatgtgttctcaggtcacccctgctgagctcct 117
>RF00695;MIR398;EU549631.1/255-370 3702:Arabidopsis thaliana (thale
cress)
Length = 116
Score = 115 bits (58), Expect = 1e-25
Identities = 101/114 (88%), Gaps = 1/114 (0%)
Strand = Plus / Plus
Query: 5 ggatctcgacagggtcgatatgagaacacatgtgcaatcaacggctgtaatgacgccaca 64
||||||||||||||| |||||||||||||| | | ||||||||||||||||||||| ||
Sbjct: 2 ggatctcgacagggttgatatgagaacacacgagtaatcaacggctgtaatgacgctacg 61
Query: 65 tcattataacacatctgtcttttcatgtgttctcaggtcacccctgctgagctc 118
||||| | ||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 62 tcattgttacagctct-cgttttcatgtgttctcaggtcacccctgctgagctc 114
>RF00695;MIR398;EU549661.1/156-270 3702:Arabidopsis thaliana (thale
cress)
Length = 115
Score = 109 bits (55), Expect = 9e-24
Identities = 100/114 (87%), Gaps = 2/114 (1%)
Strand = Plus / Plus
Query: 5 ggatctcgacagggtcgatatgagaacacatgtgcaatcaacggctgtaatgacgccaca 64
||||||||||||||| |||||||||||||| | ||||||||||||| ||| ||||| ||
Sbjct: 2 ggatctcgacagggttgatatgagaacacacgagcaatcaacggctataacgacgctacg 61
Query: 65 tcattataacacatctgtcttttcatgtgttctcaggtcacccctgctgagctc 118
||||| | ||| || || ||||||||||||||||||||||||||||||||||
Sbjct: 62 tcattgt--tacagctctcgtttcatgtgttctcaggtcacccctgctgagctc 113
>RF00695;MIR398;AC146941.8/124295-124199 3880:Medicago truncatula
(barrel medic)
Length = 97
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 87 tcatgtgttctcaggtcacccctgctga 114
||||||||||||||||| ||||||||||
Sbjct: 64 tcatgtgttctcaggtcgcccctgctga 91
>RF00695;MIR398;AASG02014986.1/899-1036 3988:Ricinus communis
(castor bean)
Length = 138
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 85 tttcatgtgttctcaggtcacccctgc 111
||||||||||||||||||| |||||||
Sbjct: 103 tttcatgtgttctcaggtcgcccctgc 129
>RF00695;MIR398;AM426431.2/9842-9931 29760:Vitis vinifera
Length = 90
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 87 tcatgtgttctcaggtcacccctgctg 113
||||||||||||||||| |||||||||
Sbjct: 57 tcatgtgttctcaggtcgcccctgctg 83
>RF00695;MIR398;AARH01000462.1/173558-173473 3694:Populus
trichocarpa
Length = 86
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 86 ttcatgtgttctcaggtcacccctgc 111
|||||||||||||||||| |||||||
Sbjct: 52 ttcatgtgttctcaggtcgcccctgc 77
