miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00648;MIR396;AARH01007577.1/188194-188047 3694:Populus
           trichocarpa
          Length = 148

 Score = 71.9 bits (36), Expect = 2e-12
 Identities = 39/40 (97%)
 Strand = Plus / Plus

                                                   
Query: 98  gcgccatgggagctcaagaaagctgtgggagaacatggca 137
           ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 108 gcgccatggaagctcaagaaagctgtgggagaacatggca 147



 Score = 63.9 bits (32), Expect = 5e-10
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                          
Query: 8  ggtcatgcttttccacagctttcttgaacttc 39
          ||||||||||||||||||||||||||||||||
Sbjct: 1  ggtcatgcttttccacagctttcttgaacttc 32




>RF00648;MIR396;AARH01002977.1/33014-32858 3694:Populus
          trichocarpa
          Length = 157

 Score = 65.9 bits (33), Expect = 1e-10
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                           
Query: 8  ggtcatgcttttccacagctttcttgaacttcc 40
          |||||||||||||||||||||||||||||||||
Sbjct: 1  ggtcatgcttttccacagctttcttgaacttcc 33



 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                
Query: 101 ccatgggagctcaagaaagctgtgggagaacatggca 137
           |||||| ||||||||||||| ||||||||||||||||
Sbjct: 120 ccatggaagctcaagaaagccgtgggagaacatggca 156




>RF00648;MIR396;AC153121.15/48150-48253 3880:Medicago truncatula
          (barrel medic)
          Length = 104

 Score = 63.9 bits (32), Expect = 5e-10
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                          
Query: 8  ggtcatgcttttccacagctttcttgaacttc 39
          ||||||||||||||||||||||||||||||||
Sbjct: 1  ggtcatgcttttccacagctttcttgaacttc 32



 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 108 agctcaagaaagctgtgggagaacatggca 137
           ||||||||||||||||||||||| ||||||
Sbjct: 74  agctcaagaaagctgtgggagaatatggca 103




>RF00648;MIR396;AP010531.1/73143-73036 34305:Lotus japonicus
          Length = 108

 Score = 63.9 bits (32), Expect = 5e-10
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                          
Query: 8  ggtcatgcttttccacagctttcttgaacttc 39
          ||||||||||||||||||||||||||||||||
Sbjct: 1  ggtcatgcttttccacagctttcttgaacttc 32




>RF00648;MIR396;AASG02001279.1/18109-18241 3988:Ricinus communis
          (castor bean)
          Length = 133

 Score = 61.9 bits (31), Expect = 2e-09
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 9  gtcatgcttttccacagctttcttgaacttc 39
          |||||||||||||||||||||||||||||||
Sbjct: 2  gtcatgcttttccacagctttcttgaacttc 32



 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 111 tcaagaaagctgtgggagaacatggca 137
           |||||||||||||||||||||||||||
Sbjct: 106 tcaagaaagctgtgggagaacatggca 132




>RF00648;MIR396;CAAP02000554.1/84783-84895 29760:Vitis vinifera
          Length = 113

 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 9  gtcatgcttttccacagctttcttgaact 37
          |||||||||||||||||||||||||||||
Sbjct: 2  gtcatgcttttccacagctttcttgaact 30



 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 108 agctcaagaaagctgtgggagaacatggca 137
           ||||||||||||||||||||| ||||||||
Sbjct: 83  agctcaagaaagctgtgggaggacatggca 112




>RF00648;MIR396;AM489352.2/13768-13664 29760:Vitis vinifera
          Length = 105

 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 11 catgcttttccacagctttcttgaacttc 39
          |||||||||||||||||||||||||||||
Sbjct: 4  catgcttttccacagctttcttgaacttc 32




>RF00648;MIR396;ABIM01011222.1/17767-17925 3649:Carica papaya
          (papaya)
          Length = 159

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                          
Query: 8  ggtcatgcttttccacagctttcttgaacttc 39
          ||||||| ||||||||||||||||||||||||
Sbjct: 1  ggtcatgtttttccacagctttcttgaacttc 32



 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 108 agctcaagaaagctgtgggagaacatggca 137
           ||||||||||||||||||||| ||||||||
Sbjct: 129 agctcaagaaagctgtgggaggacatggca 158




>RF00648;MIR396;FM164183.1/100-235 3702:Arabidopsis thaliana
          (thale cress)
          Length = 136

 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 8  ggtcatgcttttccacagctttcttgaactt 38
          |||||| ||||||||||||||||||||||||
Sbjct: 1  ggtcatacttttccacagctttcttgaactt 31



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 108 agctcaagaaagctgtgggagaacatg 134
           |||||||||||||||||||| ||||||
Sbjct: 106 agctcaagaaagctgtgggaaaacatg 132




>RF00648;MIR396;AARH01001850.1/327743-327639 3694:Populus
           trichocarpa
          Length = 105

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                         
Query: 11  catgcttttccacagctttcttgaacttcc 40
           |||| |||||||||||||||||||||||||
Sbjct: 101 catgtttttccacagctttcttgaacttcc 72



 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                          
Query: 8  ggtcatgcttttccacagctttcttgaacttc 39
          ||||||||| |||||| |||||||||||||||
Sbjct: 1  ggtcatgctattccacggctttcttgaacttc 32




>RF00648;MIR396;AC209588.1/2779-2519 4081:Solanum lycopersicum
          Length = 261

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 10 tcatgcttttccacagctttcttgaacttc 39
          ||||| ||||||||||||||||||||||||
Sbjct: 3  tcatgtttttccacagctttcttgaacttc 32




>RF00648;MIR396;FJ085642.1/369-262 3352:Pinus taeda (loblolly
          pine)
          Length = 108

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 9  gtcatgcttttccacagctttcttgaactt 38
          ||||| ||||||||||||||||||||||||
Sbjct: 2  gtcatacttttccacagctttcttgaactt 31




>RF00648;MIR396;ABXC01002982.1/36897-37040 4558:Sorghum bicolor
          (sorghum)
          Length = 144

 Score = 50.1 bits (25), Expect = 8e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 11 catgcttttccacagctttcttgaacttc 39
          ||||| |||||||||||||||||||||||
Sbjct: 4  catgcctttccacagctttcttgaacttc 32




>RF00648;MIR396;AP008208.1/34306506-34306365 39947:Oryza sativa
          Japonica Group
          Length = 142

 Score = 50.1 bits (25), Expect = 8e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 11 catgcttttccacagctttcttgaacttc 39
          ||||| |||||||||||||||||||||||
Sbjct: 4  catgcctttccacagctttcttgaacttc 32




>RF00648;MIR396;AARH01003359.1/52522-52352 3694:Populus
          trichocarpa
          Length = 171

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 11 catgcttttccacagctttcttgaactt 38
          ||||||||||||| ||||||||||||||
Sbjct: 4  catgcttttccacggctttcttgaactt 31




>RF00648;MIR396;AM481354.2/2056-2230 29760:Vitis vinifera
          Length = 175

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 11 catgcttttccacagctttcttgaactt 38
          ||||||||||||| ||||||||||||||
Sbjct: 4  catgcttttccacggctttcttgaactt 31




>RF00648;MIR396;CAAP02000221.1/3577-3471 29760:Vitis vinifera
          Length = 107

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 109 gctcaagaaagctgtgggagaacatgg 135
           ||||||||||||||||||| |||||||
Sbjct: 78  gctcaagaaagctgtgggaaaacatgg 104




>RF00648;MIR396;AC226039.1/69968-70054 4641:Musa acuminata
          Length = 87

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 16 ttttccacagctttcttgaactt 38
          |||||||||||||||||||||||
Sbjct: 9  ttttccacagctttcttgaactt 31