miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00051;mir-17;ABRQ01318668.1/84-4 9813:Procavia capensis (cape
rock hyrax)
Length = 81
Score = 65.9 bits (33), Expect = 5e-11
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 1 atgtcaaagtgctaacagtgcaggtagctttttgagttctactgcagtgccagcacttct 60
|||| |||||||| ||||||||||||| ||| ||| ||||||||| ||| |||||||||
Sbjct: 9 atgtaaaagtgcttacagtgcaggtagttttcagagatctactgcaatgcaagcacttct 68
Query: 61 tacat 65
|||||
Sbjct: 69 tacat 73
>RF00051;mir-17;AAGV020837898.1/118-39 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 80
Score = 63.9 bits (32), Expect = 2e-10
Identities = 54/60 (90%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 6 aaagtgctaacagtgcaggtagctttttgagttctactgcagtgccagcacttcttacat 65
|||||||| |||||||||||| |||||||| ||||||||| ||| ||||||||||||||
Sbjct: 14 aaagtgcttgcagtgcaggtag-tttttgagatctactgcaatgcaagcacttcttacat 72
>RF00051;mir-17;CAAB01000095.1/5425-5345 31033:Takifugu rubripes
Length = 81
Score = 48.1 bits (24), Expect = 1e-05
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 2 tgtcaaagtgctaacagtgcaggtagctttttgagttctactgcagtg 49
|||||||||||| ||||||||||||| || ||| ||||||||||||
Sbjct: 10 tgtcaaagtgcttacagtgcaggtagtttgatgacatctactgcagtg 57
>RF00051;mir-17;AANH01005312.1/96166-96086 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 81
Score = 48.1 bits (24), Expect = 1e-05
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 2 tgtcaaagtgctaacagtgcaggtagctttttgagttctactgcagtg 49
|||||||||||| ||||||||||||| ||| | | ||||||||||||
Sbjct: 10 tgtcaaagtgcttacagtgcaggtagttttatcaaatctactgcagtg 57
>RF00051;mir-17;AAPN01018584.1/1527-1606 9258:Ornithorhynchus
anatinus (platypus)
Length = 80
Score = 46.1 bits (23), Expect = 5e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 6 aaagtgctaacagtgcaggtagctttt 32
|||||||| ||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtagctttt 40
>RF00051;mir-17;AAHX01085677.1/1620-1701 10116:Rattus norvegicus
(Norway rat)
Length = 82
Score = 46.1 bits (23), Expect = 5e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 atgtcaaagtgctaacagtgcaggtag 27
||||||||||||| |||||||||||||
Sbjct: 9 atgtcaaagtgcttacagtgcaggtag 35
>RF00051;mir-17;AADN02029366.1/35604-35522 9031:Gallus gallus
(chicken)
Length = 83
Score = 46.1 bits (23), Expect = 5e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 atgtcaaagtgctaacagtgcaggtag 27
||||||||||||| |||||||||||||
Sbjct: 9 atgtcaaagtgcttacagtgcaggtag 35
>RF00051;mir-17;AAVX01531971.1/673-753 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 46.1 bits (23), Expect = 5e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 atgtcaaagtgctaacagtgcaggtag 27
||||||||||||| |||||||||||||
Sbjct: 9 atgtcaaagtgcttacagtgcaggtag 35
>RF00051;mir-17;CAAK05051440.1/16292-16212 7955:Danio rerio
(zebrafish)
Length = 81
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 2 tgtcaaagtgctaacagtgcaggtag 27
|||||||||||| |||||||||||||
Sbjct: 10 tgtcaaagtgcttacagtgcaggtag 35
>RF00051;mir-17;CAAK05029381.1/11768-11850 7955:Danio rerio
(zebrafish)
Length = 83
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 2 tgtcaaagtgctaacagtgcaggtag 27
|||||||||||| |||||||||||||
Sbjct: 10 tgtcaaagtgcttacagtgcaggtag 35
>RF00051;mir-17;AANH01000396.1/151542-151460 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 83
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 2 tgtcaaagtgctaacagtgcaggtag 27
|||||||||||| |||||||||||||
Sbjct: 10 tgtcaaagtgcttacagtgcaggtag 35
>RF00051;mir-17;BAAF04006740.1/10494-10412 8090:Oryzias latipes
(Japanese medaka)
Length = 83
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 2 tgtcaaagtgctaacagtgcaggtag 27
|||||||||||| |||||||||||||
Sbjct: 10 tgtcaaagtgcttacagtgcaggtag 35
>RF00051;mir-17;BAAF04019480.1/14298-14217 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 2 tgtcaaagtgctaacagtgcaggtag 27
|||||||||||| |||||||||||||
Sbjct: 10 tgtcaaagtgcttacagtgcaggtag 35
