miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00052;lin-4;ABRQ01036339.1/2289-2358 9813:Procavia capensis
          (cape rock hyrax)
          Length = 70

 Score =  129 bits (65), Expect = 5e-30
 Identities = 68/69 (98%)
 Strand = Plus / Plus

                                                                      
Query: 2  cctagtccctgagaccctaacttgtgaggtattttagtaacatcacaagtcaggttcttg 61
          |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 2  cctagtccctgagaccctaacttgtgaggtatttcagtaacatcacaagtcaggttcttg 61

                   
Query: 62 ggacctagg 70
          |||||||||
Sbjct: 62 ggacctagg 70




>RF00052;lin-4;AADN02042928.1/16455-16525 9031:Gallus gallus
          (chicken)
          Length = 71

 Score = 91.7 bits (46), Expect = 1e-18
 Identities = 65/70 (92%), Gaps = 1/70 (1%)
 Strand = Plus / Plus

                                                                      
Query: 2  cctagtccctgagaccctaacttgtgaggtattttagtaac-atcacaagtcaggttctt 60
          |||||||||||||||||||||||||||||| || ||| ||| ||||||||||||| ||||
Sbjct: 2  cctagtccctgagaccctaacttgtgaggttttgtagcaacaatcacaagtcaggctctt 61

                    
Query: 61 gggacctagg 70
          ||||||||||
Sbjct: 62 gggacctagg 71




>RF00052;lin-4;AAQQ01300049.1/868-937 43179:Spermophilus
          tridecemlineatus (thirteen-lined ground squirrel)
          Length = 70

 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 5  agtccctgagaccctaacttgtga 28
          ||||||||||||||||||||||||
Sbjct: 5  agtccctgagaccctaacttgtga 28




>RF00052;lin-4;CAAK05045496.1/11692-11621 7955:Danio rerio
          (zebrafish)
          Length = 72

 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 6  gtccctgagaccctaacttgtgag 29
          ||||||||||||||||||||||||
Sbjct: 6  gtccctgagaccctaacttgtgag 29




>RF00052;lin-4;AAVX01166684.1/76-6 7868:Callorhinchus milii (ghost
          shark)
          Length = 71

 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 5  agtccctgagaccctaacttgtga 28
          ||||||||||||||||||||||||
Sbjct: 5  agtccctgagaccctaacttgtga 28




>RF00052;lin-4;AAJJ01000960.1/11976-11909 7070:Tribolium castaneum
          (red flour beetle)
          Length = 68

 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 1  gcctagtccctgagaccctaacttgtga 28
          ||||| ||||||||||||||||||||||
Sbjct: 1  gcctattccctgagaccctaacttgtga 28




>RF00052;lin-4;AAWZ01018120.1/1937-2007 28377:Anolis carolinensis
          (green anole)
          Length = 71

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 6  gtccctgagaccctaacttgtga 28
          |||||||||||||||||||||||
Sbjct: 6  gtccctgagaccctaacttgtga 28




>RF00052;lin-4;BAAF04027540.1/8397-8327 8090:Oryzias latipes
          (Japanese medaka)
          Length = 71

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 6  gtccctgagaccctaacttgtga 28
          |||||||||||||||||||||||
Sbjct: 6  gtccctgagaccctaacttgtga 28




>RF00052;lin-4;BAAE01206590.1/1293-1364 8090:Oryzias latipes
          (Japanese medaka)
          Length = 72

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 7  tccctgagaccctaacttgtgag 29
          |||||||||||||||||||||||
Sbjct: 7  tccctgagaccctaacttgtgag 29




>RF00052;lin-4;AAGJ02034255.1/5710-5639 7668:Strongylocentrotus
          purpuratus
          Length = 72

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 7  tccctgagaccctaacttgtga 28
          ||||||||||||||||||||||
Sbjct: 7  tccctgagaccctaacttgtga 28




>RF00052;lin-4;BX284646.4/38142-38072 7955:Danio rerio (zebrafish)
          Length = 71

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 7  tccctgagaccctaacttgtga 28
          ||||||||||||||||||||||
Sbjct: 7  tccctgagaccctaacttgtga 28




>RF00052;lin-4;CR936972.7/85128-85059 7955:Danio rerio (zebrafish)
          Length = 70

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 7  tccctgagaccctaacttgtgaggtatttt 36
          ||||||||||||||||| ||||||| ||||
Sbjct: 7  tccctgagaccctaactcgtgaggtctttt 36




>RF00052;lin-4;BX663520.9/242554-242624 7955:Danio rerio
          (zebrafish)
          Length = 71

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 7  tccctgagaccctaacttgtga 28
          ||||||||||||||||||||||
Sbjct: 7  tccctgagaccctaacttgtga 28




>RF00052;lin-4;CAAB01001308.1/53300-53230 31033:Takifugu rubripes
          Length = 71

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 7  tccctgagaccctaacttgtga 28
          ||||||||||||||||||||||
Sbjct: 7  tccctgagaccctaacttgtga 28




>RF00052;lin-4;BAAF04030494.1/1393-1463 8090:Oryzias latipes
          (Japanese medaka)
          Length = 71

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 7  tccctgagaccctaacttgtga 28
          ||||||||||||||||||||||
Sbjct: 7  tccctgagaccctaacttgtga 28




>RF00052;lin-4;ABEP02005607.1/36374-36438 7739:Branchiostoma
          floridae (Florida lancelet)
          Length = 65

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 7  tccctgagaccctaacttgtga 28
          ||||||||||||||||||||||
Sbjct: 7  tccctgagaccctaacttgtga 28




>RF00052;lin-4;AAZO01005184.1/24431-24501 121224:Pediculus humanus
          corporis (human body louse)
          Length = 71

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 7  tccctgagaccctaacttgtga 28
          ||||||||||||||||||||||
Sbjct: 7  tccctgagaccctaacttgtga 28




>RF00052;lin-4;ABKQ02024066.1/14943-15012 377270:Anopheles gambiae
          S
          Length = 70

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 7  tccctgagaccctaacttgtga 28
          ||||||||||||||||||||||
Sbjct: 7  tccctgagaccctaacttgtga 28




>RF00052;lin-4;AAPU01010514.1/89504-89436 7230:Drosophila
          mojavensis
          Length = 69

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 7  tccctgagaccctaacttgtga 28
          ||||||||||||||||||||||
Sbjct: 7  tccctgagaccctaacttgtga 28




>RF00052;lin-4;ABJB010589032.1/2364-2293 6945:Ixodes scapularis
          (black-legged tick)
          Length = 72

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 7  tccctgagaccctaacttgtga 28
          ||||||||||||||||||||||
Sbjct: 7  tccctgagaccctaacttgtga 28




>RF00052;lin-4;AADG05003176.1/75746-75815 7460:Apis mellifera
          (honey bee)
          Length = 70

 Score = 42.1 bits (21), Expect = 9e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 8  ccctgagaccctaacttgtga 28
          |||||||||||||||||||||
Sbjct: 8  ccctgagaccctaacttgtga 28