miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00825;mir-344;AC107641.11/81665-81571 10090:Mus musculus (house
mouse)
Length = 95
Score = 159 bits (80), Expect = 6e-39
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 1 tttttaccagtcaggctcctggctagattccaggtaccaactggtacctgatctagccaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 tttttaccagtcaggctcctggctagattccaggtaccaactggtacctgatctagccaa 72
Query: 61 agcctgactgtaagctgcaa 80
||||||||||||||||||||
Sbjct: 73 agcctgactgtaagctgcaa 92
>RF00825;mir-344;CAAA01109888.1/35922-36016 10090:Mus musculus
(house mouse)
Length = 95
Score = 69.9 bits (35), Expect = 5e-12
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 8 cagtcaggctcctggctagattccaggtaccaactggtacctgatctagccaaagcctga 67
|||||||||| ||||||||| | ||| || || |||||||||||||||| ||||||||||
Sbjct: 20 cagtcaggctgctggctagagtacagctatcagctggtacctgatctagtcaaagcctga 79
Query: 68 ctgtaagctgc 78
| |||| ||||
Sbjct: 80 cagtaaactgc 90
>RF00825;mir-344;AAHX01005740.1/19235-19327 10116:Rattus
norvegicus (Norway rat)
Length = 93
Score = 52.0 bits (26), Expect = 1e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 41 ctggtacctgatctagccaaagcctgactgtaagctgc 78
|||||||||||||| |||||||||||||| ||| ||||
Sbjct: 51 ctggtacctgatctggccaaagcctgactataacctgc 88
>RF00825;mir-344;AAHX01005733.1/83790-83699 10116:Rattus
norvegicus (Norway rat)
Length = 92
Score = 52.0 bits (26), Expect = 1e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 41 ctggtacctgatctagccaaagcctgactgtaagctgc 78
|||||||||||||| |||||||||||||| ||| ||||
Sbjct: 50 ctggtacctgatctggccaaagcctgactttaaactgc 87
>RF00825;mir-344;AC091333.6/80056-80144 10090:Mus musculus (house
mouse)
Length = 89
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 54 tagccaaagcctgactgtaagctgc 78
|||||||||||||||||||||||||
Sbjct: 60 tagccaaagcctgactgtaagctgc 84
>RF00825;mir-344;AABR04023708.1/18504-18598 10116:Rattus
norvegicus (Norway rat)
Length = 95
Score = 44.1 bits (22), Expect = 3e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 41 ctggtacctgatctagccaaagcctgactgtaagctgc 78
|||||||||||||| |||||| ||||||| ||| ||||
Sbjct: 53 ctggtacctgatctggccaaaacctgactataacctgc 90
