miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00825;mir-344;CAAA01109888.1/35922-36016 10090:Mus musculus
(house mouse)
Length = 95
Score = 151 bits (76), Expect = 2e-36
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 17 cagtcaggctgctggctagagtacagctatcagctggtacctgatctagtcaaagcctga 76
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20 cagtcaggctgctggctagagtacagctatcagctggtacctgatctagtcaaagcctga 79
Query: 77 cagtaaactgctccag 92
||||||||||||||||
Sbjct: 80 cagtaaactgctccag 95
>RF00825;mir-344;AC107641.11/81665-81571 10090:Mus musculus (house
mouse)
Length = 95
Score = 69.9 bits (35), Expect = 5e-12
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 17 cagtcaggctgctggctagagtacagctatcagctggtacctgatctagtcaaagcctga 76
|||||||||| ||||||||| | ||| || || |||||||||||||||| ||||||||||
Sbjct: 20 cagtcaggctcctggctagattccaggtaccaactggtacctgatctagccaaagcctga 79
Query: 77 cagtaaactgc 87
| |||| ||||
Sbjct: 80 ctgtaagctgc 90
>RF00825;mir-344;AAHX01005733.1/83790-83699 10116:Rattus
norvegicus (Norway rat)
Length = 92
Score = 50.1 bits (25), Expect = 5e-06
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 28 ctggctagagtacagctatcagctggtacctgatctagtcaaagcctgacagtaaactgc 87
|||| ||||||||| ||| ||||||||||||||| | ||||||||||| ||||||||
Sbjct: 28 ctggttagagtacactaatcggctggtacctgatctggccaaagcctgactttaaactgc 87
Query: 88 t 88
|
Sbjct: 88 t 88
>RF00825;mir-344;AAHX01005740.1/19235-19327 10116:Rattus
norvegicus (Norway rat)
Length = 93
Score = 46.1 bits (23), Expect = 8e-05
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 50 ctggtacctgatctagtcaaagcctgacagtaaactgctccag 92
|||||||||||||| | ||||||||||| ||| |||||||||
Sbjct: 51 ctggtacctgatctggccaaagcctgactataacctgctccag 93
