miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01044;mir-345;AC152061.6/175970-176065 10090:Mus musculus
(house mouse)
Length = 96
Score = 190 bits (96), Expect = 2e-48
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 1 acccaagtccaggcctgctgacccctagtccagtgcttgtggtggctactgggccctgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acccaagtccaggcctgctgacccctagtccagtgcttgtggtggctactgggccctgaa 60
Query: 61 ctaggggtctggagacctgggtttgatctccacagg 96
||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctaggggtctggagacctgggtttgatctccacagg 96
>RF01044;mir-345;AAGU02348671.1/3072-3167 9785:Loxodonta africana
(African savanna elephant)
Length = 96
Score = 101 bits (51), Expect = 2e-21
Identities = 72/79 (91%)
Strand = Plus / Plus
Query: 9 ccaggcctgctgacccctagtccagtgcttgtggtggctactgggccctgaactaggggt 68
||||| |||||||| |||||||||||||||||| |||| | ||||||||||||||||||
Sbjct: 9 ccaggtctgctgactcctagtccagtgcttgtgatggccattgggccctgaactaggggc 68
Query: 69 ctggagacctgggtttgat 87
|||||| ||||||||||||
Sbjct: 69 ctggaggcctgggtttgat 87
>RF01044;mir-345;AAYZ01540228.1/2113-2017 9978:Ochotona princeps
(American pika)
Length = 97
Score = 83.8 bits (42), Expect = 4e-16
Identities = 69/78 (88%)
Strand = Plus / Plus
Query: 9 ccaggcctgctgacccctagtccagtgcttgtggtggctactgggccctgaactaggggt 68
||||| |||||||| ||| |||||||||| | | ||||| |||||||||||||| |||||
Sbjct: 10 ccaggtctgctgactcctcgtccagtgctcgagatggctgctgggccctgaactgggggt 69
Query: 69 ctggagacctgggtttga 86
|||||| |||||||||||
Sbjct: 70 ctggaggcctgggtttga 87
>RF01044;mir-345;AAPE01429219.1/603-698 59463:Myotis lucifugus
(little brown bat)
Length = 96
Score = 75.8 bits (38), Expect = 9e-14
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 9 ccaggcctgctgacccctagtccagtgcttgtggtggctactgggccctgaactaggggt 68
||||| |||| ||| |||||||||||||||||| ||||| ||||||||| | |||||||
Sbjct: 9 ccaggtctgcggactcctagtccagtgcttgtgatggctggtgggccctgcattaggggt 68
Query: 69 ctggagacctgggt 82
|||||| |||||||
Sbjct: 69 ctggaggcctgggt 82
>RF01044;mir-345;AC193024.5/98698-98794 9544:Macaca mulatta
(rhesus monkey)
Length = 97
Score = 75.8 bits (38), Expect = 9e-14
Identities = 62/70 (88%)
Strand = Plus / Plus
Query: 17 gctgacccctagtccagtgcttgtggtggctactgggccctgaactaggggtctggagac 76
|||||| ||||||| || ||| ||||||||| |||||||||||| |||||||||||| |
Sbjct: 18 gctgactcctagtcaagggctcgtggtggctggtgggccctgaacgaggggtctggaggc 77
Query: 77 ctgggtttga 86
||||||||||
Sbjct: 78 ctgggtttga 87
>RF01044;mir-345;AAIY01055903.1/172-268 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 97
Score = 75.8 bits (38), Expect = 9e-14
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 9 ccaggcctgctgacccctagtccagtgcttgtggtggctactgggccctgaactaggggt 68
|||||||||||||| |||||||||||||| ||| ||| | ||||||||||||||||||
Sbjct: 9 ccaggcctgctgactcctagtccagtgctcgtgatgggcatagggccctgaactaggggt 68
Query: 69 ctggag 74
||||||
Sbjct: 69 ctggag 74
>RF01044;mir-345;AALT01091699.1/386-481 42254:Sorex araneus
(European shrew)
Length = 96
Score = 67.9 bits (34), Expect = 2e-11
Identities = 67/78 (85%)
Strand = Plus / Plus
Query: 9 ccaggcctgctgacccctagtccagtgcttgtggtggctactgggccctgaactaggggt 68
||||||| |||||| | |||||||||||| ||| |||| |||||||||||||| ||||
Sbjct: 9 ccaggccggctgactcttagtccagtgctcgtgaaggctgctgggccctgaactgagggt 68
Query: 69 ctggagacctgggtttga 86
|||||| |||||| ||||
Sbjct: 69 ctggaggcctgggcttga 86
>RF01044;mir-345;AAKN02051921.1/6097-6192 10141:Cavia porcellus
(domestic guinea pig)
Length = 96
Score = 67.9 bits (34), Expect = 2e-11
Identities = 67/78 (85%)
Strand = Plus / Plus
Query: 9 ccaggcctgctgacccctagtccagtgcttgtggtggctactgggccctgaactaggggt 68
||||| |||||||| || ||||||||||| ||| | | | ||||||||||||||||||
Sbjct: 9 ccagggctgctgactcccagtccagtgctcgtgatcccagccgggccctgaactaggggt 68
Query: 69 ctggagacctgggtttga 86
|||||| |||||||||||
Sbjct: 69 ctggaggcctgggtttga 86
>RF01044;mir-345;ABRQ01086688.1/67-160 9813:Procavia capensis
(cape rock hyrax)
Length = 94
Score = 60.0 bits (30), Expect = 5e-09
Identities = 52/58 (89%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 17 gctgacccctagtccagtgcttgtggtggctactgggccctgaactaggggtctggag 74
|||||| |||||||||||||| ||| |||| | |||||| ||||||||||||||||||
Sbjct: 17 gctgactcctagtccagtgctcgtgatggccattgggcc-tgaactaggggtctggag 73
>RF01044;mir-345;ABRO01389073.1/865-964 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 100
Score = 58.0 bits (29), Expect = 2e-08
Identities = 68/80 (85%), Gaps = 2/80 (2%)
Strand = Plus / Plus
Query: 9 ccaggcctgctgacccctagtccagtgcttgtggt--ggctactgggccctgaactaggg 66
||||| |||||||| |||||||||||||| ||| | |||| ||||||||| ||||||
Sbjct: 9 ccagggctgctgactcctagtccagtgctcgtgctatggctggggggccctgagctaggg 68
Query: 67 gtctggagacctgggtttga 86
|||||||| ||||| |||||
Sbjct: 69 gtctggaggcctggctttga 88
