miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00806;mir-350;AAGU02328088.1/341-243 9785:Loxodonta africana
(African savanna elephant)
Length = 99
Score = 159 bits (80), Expect = 8e-39
Identities = 89/92 (96%)
Strand = Plus / Plus
Query: 8 ttgctcctacaagagtaaagtgcatgcgctttgggacagtgaggaaaataatgttcacaa 67
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct: 8 ttgctcctacaagagtaaagtgcacgcgctttgggacagtgaggaaaatattgttcacaa 67
Query: 68 agcccatacactttcaccctttaggagagttg 99
|||||||||||||| |||||||||||||||||
Sbjct: 68 agcccatacacttttaccctttaggagagttg 99
>RF00806;mir-350;AAWR02039510.1/16310-16408 9796:Equus caballus
(horse)
Length = 99
Score = 129 bits (65), Expect = 7e-30
Identities = 83/89 (93%)
Strand = Plus / Plus
Query: 8 ttgctcctacaagagtaaagtgcatgcgctttgggacagtgaggaaaataatgttcacaa 67
||||||||| |||||||||||||| ||||||||||||||||||||| || ||||||||||
Sbjct: 8 ttgctcctataagagtaaagtgcacgcgctttgggacagtgaggaagatgatgttcacaa 67
Query: 68 agcccatacactttcaccctttaggagag 96
|||||||||||||| || |||||||||||
Sbjct: 68 agcccatacacttttactctttaggagag 96
>RF00806;mir-350;ABRQ01049184.1/11230-11132 9813:Procavia capensis
(cape rock hyrax)
Length = 99
Score = 97.6 bits (49), Expect = 3e-20
Identities = 73/81 (90%)
Strand = Plus / Plus
Query: 8 ttgctcctacaagagtaaagtgcatgcgctttgggacagtgaggaaaataatgttcacaa 67
|||||| | ||||||| ||||||| |||||||||||| |||||||||| | || ||||||
Sbjct: 8 ttgctcattcaagagtgaagtgcacgcgctttgggactgtgaggaaaacattgctcacaa 67
Query: 68 agcccatacactttcaccctt 88
|||||||||||||||||||||
Sbjct: 68 agcccatacactttcaccctt 88
>RF00806;mir-350;AAFC03070376.1/47198-47100 9913:Bos taurus
(cattle)
Length = 99
Score = 95.6 bits (48), Expect = 1e-19
Identities = 81/92 (88%)
Strand = Plus / Plus
Query: 8 ttgctcctacaagagtaaagtgcatgcgctttgggacagtgaggaaaataatgttcacaa 67
|||||||| ||||||| || |||| | ||||||||||||||| || |||||||| |||||
Sbjct: 8 ttgctcctgcaagagtgaaatgcacgtgctttgggacagtgaagacaataatgtacacaa 67
Query: 68 agcccatacactttcaccctttaggagagttg 99
|| ||||||||||| |||| ||||||||||||
Sbjct: 68 agtccatacacttttacccattaggagagttg 99
>RF00806;mir-350;ABRR01009120.1/3250-3152 30538:Lama pacos
(alpaca)
Length = 99
Score = 85.7 bits (43), Expect = 1e-16
Identities = 79/91 (86%)
Strand = Plus / Plus
Query: 9 tgctcctacaagagtaaagtgcatgcgctttgggacagtgaggaaaataatgttcacaaa 68
||||||| |||| || ||||||||||||||| || ||||| |||||||||||| |||||
Sbjct: 9 tgctcctgcaagcatagagtgcatgcgctttgagagagtgaagaaaataatgtttacaaa 68
Query: 69 gcccatacactttcaccctttaggagagttg 99
|||||||| |||| |||||| |||| |||||
Sbjct: 69 gcccatacgcttttacccttcaggaaagttg 99
>RF00806;mir-350;AAPY01728940.1/2419-2322 37347:Tupaia belangeri
(northern tree shrew)
Length = 98
Score = 50.1 bits (25), Expect = 5e-06
Identities = 77/89 (86%), Gaps = 4/89 (4%)
Strand = Plus / Plus
Query: 1 agatgccttgctcctacaagagtaaa-gtgcatgcgctttgggacagt-gaggaaaataa 58
||||||||||||||||| |||||||| ||||| | ||||||||||| || || |||||
Sbjct: 1 agatgccttgctcctacgagagtaaacgtgca-ctgatttgggacagtggaagagaataa 59
Query: 59 tgttcacaaagcccatacactttcaccct 87
||||||| ||| ||||||||||| |||||
Sbjct: 60 tgttcac-aaggccatacacttttaccct 87
