miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00735;mir-367;AADN02009328.1/24642-24709 9031:Gallus gallus
(chicken)
Length = 68
Score = 109 bits (55), Expect = 5e-24
Identities = 61/63 (96%)
Strand = Plus / Plus
Query: 9 actgttgctaacatgcaactctgttgaatagaaattggaattgcactttagcaatggtga 68
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 6 actgttgctaacatgcaactctgttgtataaaaattggaattgcactttagcaatggtga 65
Query: 69 tgg 71
|||
Sbjct: 66 tgg 68
>RF00735;mir-367;AAIY01685397.1/7052-6985 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 68
Score = 95.6 bits (48), Expect = 7e-20
Identities = 57/60 (95%)
Strand = Plus / Plus
Query: 9 actgttgctaacatgcaactctgttgaatagaaattggaattgcactttagcaatggtga 68
||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 6 actgttgctaacatgcaactctgttcaatttaaattggaattgcactttagcaatggtga 65
>RF00735;mir-367;AAGW01417911.1/1409-1476 9986:Oryctolagus
cuniculus (rabbit)
Length = 68
Score = 93.7 bits (47), Expect = 3e-19
Identities = 59/63 (93%)
Strand = Plus / Plus
Query: 9 actgttgctaacatgcaactctgttgaatagaaattggaattgcactttagcaatggtga 68
||||||||||| |||||||||||||||||| | ||||||||||||| |||||||||||||
Sbjct: 6 actgttgctaatatgcaactctgttgaatatatattggaattgcacattagcaatggtga 65
Query: 69 tgg 71
|||
Sbjct: 66 tgg 68
>RF00735;mir-367;AANN01821362.1/2035-1968 9365:Erinaceus europaeus
(western European hedgehog)
Length = 68
Score = 77.8 bits (39), Expect = 2e-14
Identities = 57/63 (90%)
Strand = Plus / Plus
Query: 9 actgttgctaacatgcaactctgttgaatagaaattggaattgcactttagcaatggtga 68
||||||||||| |||||||||||| | || ||||||||||||||||||||||||||||
Sbjct: 6 actgttgctaatgtgcaactctgttcagtaccaattggaattgcactttagcaatggtga 65
Query: 69 tgg 71
|||
Sbjct: 66 tgg 68
>RF00735;mir-367;AAHX01020222.1/16082-16015 10116:Rattus
norvegicus (Norway rat)
Length = 68
Score = 71.9 bits (36), Expect = 1e-12
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 4 ccgtcactgttgctaacatgcaactctgttgaatagaaattggaattgcactttagcaat 63
||||||||| |||||| |||||||||||||| | | | ||||||||||||||||||||
Sbjct: 1 ccgtcactgctgctaatctgcaactctgttgagcacacactggaattgcactttagcaat 60
Query: 64 ggtgatgg 71
||||||||
Sbjct: 61 ggtgatgg 68
>RF00735;mir-367;ABRN01119546.1/243-176 9739:Tursiops truncatus
(bottlenosed dolphin)
Length = 68
Score = 69.9 bits (35), Expect = 4e-12
Identities = 56/63 (88%)
Strand = Plus / Plus
Query: 9 actgttgctaacatgcaactctgttgaatagaaattggaattgcactttagcaatggtga 68
|||||||| || ||||||||||||| |||| |||||||||||| ||||||||||||||
Sbjct: 6 actgttgccaatatgcaactctgttcaatacaaattggaattgtgttttagcaatggtga 65
Query: 69 tgg 71
|||
Sbjct: 66 tgg 68
>RF00735;mir-367;ABVD01917286.1/669-603 9358:Choloepus hoffmanni
(Hoffmann's two-fingered sloth)
Length = 67
Score = 65.9 bits (33), Expect = 7e-11
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 9 actgttgctaacatgcaactctgttgaatagaaattggaattgcacttt 57
||||||||||| ||||||||||||| |||| ||| ||||||||||||||
Sbjct: 6 actgttgctaatatgcaactctgttcaatataaactggaattgcacttt 54
>RF00735;mir-367;AAWZ01008661.1/78859-78792 28377:Anolis
carolinensis (green anole)
Length = 68
Score = 61.9 bits (31), Expect = 1e-09
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 9 actgttgctaacatgcaactctgttgaatagaaattggaattgcactttagcaatggtga 68
||||||||||| |||||||||||| || || |||||||||||||||||||||||||
Sbjct: 6 actgttgctaatgtgcaactctgttatgtataatctggaattgcactttagcaatggtga 65
Query: 69 tgg 71
|||
Sbjct: 66 tgg 68
>RF00735;mir-367;ABRP01199153.1/3576-3511 132908:Pteropus vampyrus
(large flying fox)
Length = 66
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 44 tggaattgcactttagcaatggtga 68
|||||||||||||||||||||||||
Sbjct: 39 tggaattgcactttagcaatggtga 63
>RF00735;mir-367;AAPY01684075.1/7711-7646 37347:Tupaia belangeri
(northern tree shrew)
Length = 66
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 44 tggaattgcactttagcaatggtga 68
|||||||||||||||||||||||||
Sbjct: 39 tggaattgcactttagcaatggtga 63
>RF00735;mir-367;AAKN02038884.1/104135-104068 10141:Cavia
porcellus (domestic guinea pig)
Length = 68
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 44 tggaattgcactttagcaatggtga 68
|||||||||||||||||||||||||
Sbjct: 41 tggaattgcactttagcaatggtga 65
