miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;ABRQ01054372.1/1100-1179 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 105 bits (53), Expect = 9e-23
Identities = 71/77 (92%)
Strand = Plus / Plus
Query: 4 ggtatttaaaaggtggatattccttctatgtttatgctttttgtgattaaacatagagga 63
|||||||||||||||||||||||||||||||||||| | ||| || ||||||||||||||
Sbjct: 1 ggtatttaaaaggtggatattccttctatgtttatgttatttatggttaaacatagagga 60
Query: 64 aatttcacgttttcagt 80
|||| ||| ||||||||
Sbjct: 61 aattccacattttcagt 77
>RF00641;mir-154;AAQR01332677.1/6513-6587 30611:Otolemur garnettii
(small-eared galago)
Length = 75
Score = 63.9 bits (32), Expect = 3e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 4 ggtatttaaaaggtggatattccttctatgtt 35
||||||||||||||||||||||||||||||||
Sbjct: 1 ggtatttaaaaggtggatattccttctatgtt 32
>RF00641;mir-154;AANN01196583.1/1560-1639 9365:Erinaceus europaeus
(western European hedgehog)
Length = 80
Score = 61.9 bits (31), Expect = 1e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 4 ggtatttaaaaggtggatattccttctatgtttat 38
||||||||||||||||||||| |||||||||||||
Sbjct: 1 ggtatttaaaaggtggatatttcttctatgtttat 35
>RF00641;mir-154;CAAA01088157.1/21210-21131 10090:Mus musculus
(house mouse)
Length = 80
Score = 60.0 bits (30), Expect = 5e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 4 ggtatttaaaaggtggatattccttctatg 33
||||||||||||||||||||||||||||||
Sbjct: 1 ggtatttaaaaggtggatattccttctatg 30
>RF00641;mir-154;AAGW01206553.1/1248-1327 9986:Oryctolagus
cuniculus (rabbit)
Length = 80
Score = 60.0 bits (30), Expect = 5e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 4 ggtatttaaaaggtggatattccttctatgttta 37
|||||||||||||||||| |||||||||||||||
Sbjct: 1 ggtatttaaaaggtggattttccttctatgttta 34
>RF00641;mir-154;ABRQ01054372.1/730-809 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 11 aaaaggtggatattccttctatgtttatg 39
|||||||||||||||||||||||||||||
Sbjct: 8 aaaaggtggatattccttctatgtttatg 36
>RF00641;mir-154;AAFC03087120.1/1987-1908 9913:Bos taurus (cattle)
Length = 80
Score = 56.0 bits (28), Expect = 7e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 6 tatttaaaaggtggatattccttctatgttta 37
|||| |||||||||||||||||||||||||||
Sbjct: 3 tattcaaaaggtggatattccttctatgttta 34
>RF00641;mir-154;ABRT010163748.1/957-1036 9478:Tarsius syrichta
(Philippine tarsier)
Length = 80
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 11 aaaaggtggatattccttctatgttta 37
|||||||||||||||||||||||||||
Sbjct: 8 aaaaggtggatattccttctatgttta 34
>RF00641;mir-154;ABDC01257673.1/7254-7333 30608:Microcebus murinus
(gray mouse lemur)
Length = 80
Score = 50.1 bits (25), Expect = 5e-06
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 11 aaaaggtggatattccttctatgtttatgctttttgtgattaaacatagaggaaatttca 70
||||||||||| ||||||||||||||| |||||| |||| ||||||||||| | ||
Sbjct: 8 aaaaggtggatgttccttctatgtttacaggatttgtggttaatcatagaggaaaatcca 67
Query: 71 cgttttcag 79
| |||||||
Sbjct: 68 cattttcag 76
>RF00641;mir-154;AAKN02051949.1/111080-111159 10141:Cavia
porcellus (domestic guinea pig)
Length = 80
Score = 50.1 bits (25), Expect = 5e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 4 ggtatttaaaaggtggatattccttctatgtttatgc 40
|||||||||||||||||| ||||| ||||| ||||||
Sbjct: 1 ggtatttaaaaggtggattttcctcctatgattatgc 37
>RF00641;mir-154;AAIY01443497.1/2027-2105 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 79
Score = 50.1 bits (25), Expect = 5e-06
Identities = 65/77 (84%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 4 ggtatttaaaaggtggatattccttctatgtttatgctttttgtgattaaacatagagga 63
|||||||||||||| ||| |||||| |||| ||| | |||| || |||| |||||||||
Sbjct: 1 ggtatttaaaaggtagattttccttttatggttacg-ttttgatggttaatcatagagga 59
Query: 64 aatttcacgttttcagt 80
|| | ||||||||||||
Sbjct: 60 aaatccacgttttcagt 76
>RF00641;mir-154;ABRQ01054372.1/2194-2273 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 50.1 bits (25), Expect = 5e-06
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 4 ggtatttaaaaggtggatattccttctatgtttatgctttttgtgattaaacatagagga 63
|||||||||||||| ||| |||||||||| || | ||| ||||||| |||||||||
Sbjct: 1 ggtatttaaaaggtagattctccttctatgagtacattatttatgattaatcatagagga 60
Query: 64 aatttcacgttttcagt 80
|| | ||||||||||||
Sbjct: 61 aaatccacgttttcagt 77
>RF00641;mir-154;ABRQ01054372.1/1857-1937 9813:Procavia capensis
(cape rock hyrax)
Length = 81
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 4 ggtatttaaaaggtggatattccttctatgttt 36
|||||||||||||||||| ||||| ||||||||
Sbjct: 1 ggtatttaaaaggtggattttcctcctatgttt 33
>RF00641;mir-154;AAYZ01424898.1/1376-1455 9978:Ochotona princeps
(American pika)
Length = 80
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 50 ttaaacatagaggaaatttcacgttttcagt 80
|||| ||||||||||||| ||||||||||||
Sbjct: 47 ttaatcatagaggaaattccacgttttcagt 77
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 4 ggtatttaaaaggtggatattccttc 29
|||||||||||||||||| |||||||
Sbjct: 1 ggtatttaaaaggtggattttccttc 26
>RF00641;mir-154;AAGW01206553.1/392-471 9986:Oryctolagus cuniculus
(rabbit)
Length = 80
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 4 ggtatttaaaaggtggatattccttctatgt 34
|||||| ||||||||||| ||||||||||||
Sbjct: 1 ggtattcaaaaggtggatgttccttctatgt 31
>RF00641;mir-154;ABRP01151523.1/16147-16226 132908:Pteropus
vampyrus (large flying fox)
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 12 aaaggtggatattccttctatgttta 37
|||||||||| |||||||||||||||
Sbjct: 9 aaaggtggattttccttctatgttta 34
>RF00641;mir-154;AANG01662501.1/383-463 9685:Felis catus (domestic
cat)
Length = 81
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 4 ggtatttaaaaggtggatattccttctatgttta 37
|||||| | ||||||||| |||||||||||||||
Sbjct: 1 ggtattcagaaggtggatgttccttctatgttta 34
