miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00711;mir-449;AAHY01110258.1/31074-30983 10090:Mus musculus
(house mouse)
Length = 92
Score = 182 bits (92), Expect = 6e-46
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 11 gtgggtgtgtcaggcaggcagtgcattgctagctggctgttagaactttatcccaacagt 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgggtgtgtcaggcaggcagtgcattgctagctggctgttagaactttatcccaacagt 60
Query: 71 tgctagctgcactaccctctgctgcactcaga 102
||||||||||||||||||||||||||||||||
Sbjct: 61 tgctagctgcactaccctctgctgcactcaga 92
>RF00711;mir-449;AAQQ01588713.1/2879-2788 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 92
Score = 105 bits (53), Expect = 1e-22
Identities = 74/81 (91%)
Strand = Plus / Plus
Query: 16 tgtgtcaggcaggcagtgcattgctagctggctgttagaactttatcccaacagttgcta 75
||||||||| |||||||||||||||||||||||||||||| || ||| |||||||||||
Sbjct: 6 tgtgtcaggtaggcagtgcattgctagctggctgttagaatttcatcttaacagttgcta 65
Query: 76 gctgcactaccctctgctgca 96
| |||||| ||||||||||||
Sbjct: 66 gttgcactcccctctgctgca 86
>RF00711;mir-449;ABRN01386480.1/1100-1009 9739:Tursiops truncatus
(bottlenosed dolphin)
Length = 92
Score = 63.9 bits (32), Expect = 4e-10
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 12 tgggtgtgtcaggcaggcagtgcattgctagctggctgttagaactttatcccaacagtt 71
||||||||||||| ||||||||||| ||||||||||||| || || || |||||||
Sbjct: 2 tgggtgtgtcaggtaggcagtgcatctttagctggctgttataatttcattttaacagtt 61
Query: 72 gctagctgcactaccctctg 91
||||| |||||| |||||||
Sbjct: 62 gctagttgcactcccctctg 81
>RF00711;mir-449;AAWR02016364.1/4252-4337 9796:Equus caballus
(horse)
Length = 86
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 16 tgtgtcaggcaggcagtgcattgctagctggct 48
||||||||| |||||||||||||||||||||||
Sbjct: 6 tgtgtcaggtaggcagtgcattgctagctggct 38
>RF00711;mir-449;AANN01422130.1/1413-1504 9365:Erinaceus europaeus
(western European hedgehog)
Length = 92
Score = 58.0 bits (29), Expect = 2e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 16 tgtgtcaggcaggcagtgcattgctagctggctgtta 52
||||||||| |||||||||||| ||||||||||||||
Sbjct: 6 tgtgtcagggaggcagtgcattactagctggctgtta 42
>RF00711;mir-449;ABRP01028864.1/1010-924 132908:Pteropus vampyrus
(large flying fox)
Length = 87
Score = 58.0 bits (29), Expect = 2e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 16 tgtgtcaggcaggcagtgcattgctagctggctgtta 52
||||||||| ||||||| |||||||||||||||||||
Sbjct: 6 tgtgtcaggtaggcagtacattgctagctggctgtta 42
>RF00711;mir-449;AAQR01454395.1/1341-1250 30611:Otolemur garnettii
(small-eared galago)
Length = 92
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 16 tgtgtcaggcaggcagtgcattgctagctggctgtt 51
|||||| || ||||||||||||||||||||||||||
Sbjct: 6 tgtgtcgggtaggcagtgcattgctagctggctgtt 41
>RF00711;mir-449;ABVD01243309.1/246-153 9358:Choloepus hoffmanni
(Hoffmann's two-fingered sloth)
Length = 94
Score = 54.0 bits (27), Expect = 4e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 16 tgtgtcaggcaggcagtgcattgctagctggctgt 50
||||||||| |||||||||||||||| ||||||||
Sbjct: 6 tgtgtcaggtaggcagtgcattgctatctggctgt 40
>RF00711;mir-449;AAKN02031494.1/12165-12258 10141:Cavia porcellus
(domestic guinea pig)
Length = 94
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 26 aggcagtgcattgctagctggctgtta 52
|||||||||||||||||||||||||||
Sbjct: 16 aggcagtgcattgctagctggctgtta 42
>RF00711;mir-449;AAPY01138081.1/497-406 37347:Tupaia belangeri
(northern tree shrew)
Length = 92
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 16 tgtgtcaggcaggcagtgcattgctagctggctgtt 51
||||||||| ||||||||| |||||||||||||||
Sbjct: 6 tgtgtcaggttggcagtgcaatgctagctggctgtt 41
>RF00711;mir-449;ACBE01026175.1/1166-1235 9685:Felis catus
(domestic cat)
Length = 70
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 26 aggcagtgcattgctagctggctgtta 52
|||||| ||||||||||||||||||||
Sbjct: 5 aggcagcgcattgctagctggctgtta 31
