miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01910;mir-506;CAAA01198193.1/2697-2611 10090:Mus musculus
(house mouse)
Length = 87
Score = 157 bits (79), Expect = 2e-38
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 1 gatacccaccatgccttttgctctgcactcagtaaataataatttgtgaatgtgtagcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 gatacccaccatgccttttgctctgcactcagtaaataataatttgtgaatgtgtagcaa 65
Query: 61 aagacaggatggggatcca 79
|||||||||||||||||||
Sbjct: 66 aagacaggatggggatcca 84
>RF01910;mir-506;AAKN02052617.1/27207-27121 10141:Cavia porcellus
(domestic guinea pig)
Length = 87
Score = 93.7 bits (47), Expect = 3e-19
Identities = 71/79 (89%)
Strand = Plus / Plus
Query: 1 gatacccaccatgccttttgctctgcactcagtaaataataatttgtgaatgtgtagcaa 60
|||||||| |||| ||||||||||||| |||||||||| | ||||||||||||||||||
Sbjct: 6 gatacccatcatgtcttttgctctgcagtcagtaaatatttatttgtgaatgtgtagcag 65
Query: 61 aagacaggatggggatcca 79
||||||| ||||||||||
Sbjct: 66 aagacagactggggatcca 84
>RF01910;mir-506;AANU01171359.1/25447-25533 9544:Macaca mulatta
(rhesus monkey)
Length = 87
Score = 87.7 bits (44), Expect = 2e-17
Identities = 68/76 (89%)
Strand = Plus / Plus
Query: 4 acccaccatgccttttgctctgcactcagtaaataataatttgtgaatgtgtagcaaaag 63
||||||| || ||||||||||||| |||||||||| | |||||||||||||||||||||
Sbjct: 9 acccaccttgtcttttgctctgcagtcagtaaatatttttttgtgaatgtgtagcaaaag 68
Query: 64 acaggatggggatcca 79
|||| |||||| ||||
Sbjct: 69 acagaatgggggtcca 84
>RF01910;mir-506;ABRO01104372.1/4556-4470 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 87
Score = 61.9 bits (31), Expect = 1e-09
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 5 cccaccatgccttttgctctgcactcagtaaataataatttgtgaatgtgtagcaaaaga 64
|||| |||| ||||||||||||| ||||| | | | ||||||||||||||||||||||
Sbjct: 10 cccatcatgtcttttgctctgcagtcagtcagtgttgatttgtgaatgtgtagcaaaagg 69
Query: 65 caggatgggga 75
||| |||||||
Sbjct: 70 cagaatgggga 80
