miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01897;mir-188;AAHY01206841.1/3828-3933 10090:Mus musculus (house
mouse)
Length = 106
Score = 190 bits (96), Expect = 2e-48
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 1 cagatttgctttttctcttccatgccttgagtgtaggaccgttgacatcttaattaccct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 cagatttgctttttctcttccatgccttgagtgtaggaccgttgacatcttaattaccct 65
Query: 61 cccacacccaaggcttgcaggagagcaagccttctc 96
||||||||||||||||||||||||||||||||||||
Sbjct: 66 cccacacccaaggcttgcaggagagcaagccttctc 101
>RF01897;mir-188;ABRO01329850.1/1587-1692 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 106
Score = 141 bits (71), Expect = 2e-33
Identities = 86/91 (94%)
Strand = Plus / Plus
Query: 6 ttgctttttctcttccatgccttgagtgtaggaccgttgacatcttaattaccctcccac 65
||||||| |||| | ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 11 ttgctttctctccttcatgccttgagtgtaggaccgttagcatcttaattaccctcccac 70
Query: 66 acccaaggcttgcaggagagcaagccttctc 96
|||||||||||||||||||||||||||||||
Sbjct: 71 acccaaggcttgcaggagagcaagccttctc 101
>RF01897;mir-188;AAGW01126437.1/520-625 9986:Oryctolagus cuniculus
(rabbit)
Length = 106
Score = 133 bits (67), Expect = 5e-31
Identities = 85/91 (93%)
Strand = Plus / Plus
Query: 6 ttgctttttctcttccatgccttgagtgtaggaccgttgacatcttaattaccctcccac 65
||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 11 ttgctttctctcttccatgccttgagtgtaggactgttggaatcttaattaccctcccac 70
Query: 66 acccaaggcttgcaggagagcaagccttctc 96
|||||||||||||||||||| |||||||||
Sbjct: 71 acccaaggcttgcaggagagtgagccttctc 101
>RF01897;mir-188;AAEX02025396.1/219014-218909 9615:Canis lupus
familiaris (dog)
Length = 106
Score = 131 bits (66), Expect = 2e-30
Identities = 81/86 (94%)
Strand = Plus / Plus
Query: 6 ttgctttttctcttccatgccttgagtgtaggaccgttgacatcttaattaccctcccac 65
||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 11 ttgctttctctcttacatgccttgagtgtaggaccgttggtatcttaattaccctcccac 70
Query: 66 acccaaggcttgcaggagagcaagcc 91
|||||||||||||||||| |||||||
Sbjct: 71 acccaaggcttgcaggagggcaagcc 96
>RF01897;mir-188;AAGU02358860.1/2697-2802 9785:Loxodonta africana
(African savanna elephant)
Length = 106
Score = 111 bits (56), Expect = 2e-24
Identities = 71/76 (93%)
Strand = Plus / Plus
Query: 10 tttttctcttccatgccttgagtgtaggaccgttgacatcttaattaccctcccacaccc 69
|||||||||| |||||||||||||||||||||||| || ||||||| ||||||||||||
Sbjct: 15 tttttctcttacatgccttgagtgtaggaccgttggtatattaattatcctcccacaccc 74
Query: 70 aaggcttgcaggagag 85
||||||||||||||||
Sbjct: 75 aaggcttgcaggagag 90
>RF01897;mir-188;AANN01828942.1/2423-2529 9365:Erinaceus europaeus
(western European hedgehog)
Length = 107
Score = 103 bits (52), Expect = 4e-22
Identities = 70/76 (92%)
Strand = Plus / Plus
Query: 6 ttgctttttctcttccatgccttgagtgtaggaccgttgacatcttaattaccctcccac 65
||||||| |||||| |||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 11 ttgctttgtctcttgcatgccttgagtgtaggaccgttggcatctctgttaccctcccac 70
Query: 66 acccaaggcttgcagg 81
||||||||||||||||
Sbjct: 71 acccaaggcttgcagg 86
>RF01897;mir-188;ABRQ01388379.1/2083-2188 9813:Procavia capensis
(cape rock hyrax)
Length = 106
Score = 97.6 bits (49), Expect = 2e-20
Identities = 82/93 (88%)
Strand = Plus / Plus
Query: 3 gatttgctttttctcttccatgccttgagtgtaggaccgttgacatcttaattaccctcc 62
||||||||||||||||| |||||||||||||||||| ||| ||| ||| ||| |||||
Sbjct: 8 gatttgctttttctcttacatgccttgagtgtaggaatgttagcatattagttatcctcc 67
Query: 63 cacacccaaggcttgcaggagagcaagccttct 95
||||||||||| ||||||||||| ||||||||
Sbjct: 68 cacacccaaggtttgcaggagagagagccttct 100
