miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00928;mir-590;AANU01190949.1/13092-13188 9544:Macaca mulatta
(rhesus monkey)
Length = 97
Score = 125 bits (63), Expect = 9e-29
Identities = 72/75 (96%)
Strand = Plus / Plus
Query: 1 agtcagaaatgagcttattcataaaagtgcagtatggtgaagtcaatctgtaattttatg 60
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 6 agtcagaaatgagcttattcataaaagtgcagtatggtggagtcagtctgtaattttatg 65
Query: 61 tataagctagtctct 75
|||||||| ||||||
Sbjct: 66 tataagctggtctct 80
>RF00928;mir-590;AAQQ01313324.1/3303-3207 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 97
Score = 89.7 bits (45), Expect = 5e-18
Identities = 69/77 (89%)
Strand = Plus / Plus
Query: 1 agtcagaaatgagcttattcataaaagtgcagtatggtgaagtcaatctgtaattttatg 60
|||||||||||||||||||||||||||| |||||| | ||| | ||||||||||||||
Sbjct: 6 agtcagaaatgagcttattcataaaagtacagtatcatccagtaagtctgtaattttatg 65
Query: 61 tataagctagtctctga 77
|||||||| ||||||||
Sbjct: 66 tataagctggtctctga 82
>RF00928;mir-590;AAPN01308740.1/1340-1245 9258:Ornithorhynchus
anatinus (platypus)
Length = 96
Score = 77.8 bits (39), Expect = 2e-14
Identities = 70/79 (88%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 3 tcagaaatgagcttattcataaaagtgcagtatggtgaagtcaatctgtaattttatgta 62
|||||||||||||||| ||||||||| |||||| || | || || ||||| ||||||| |
Sbjct: 8 tcagaaatgagcttatccataaaagtacagtatcgtca-gtaaacctgtacttttatgga 66
Query: 63 taagctagtctctgattga 81
|||||||||||||||||||
Sbjct: 67 taagctagtctctgattga 85
>RF00928;mir-590;AAPY01718744.1/4971-4879 37347:Tupaia belangeri
(northern tree shrew)
Length = 93
Score = 63.9 bits (32), Expect = 3e-10
Identities = 69/81 (85%), Gaps = 4/81 (4%)
Strand = Plus / Plus
Query: 1 agtcagaaatgagcttattcataaaagtgcagtatggtgaagtcaatctgtaattttatg 60
|||||||| ||||||||||||||||||| |||||| || ||| |||| ||||||
Sbjct: 6 agtcagaagtgagcttattcataaaagtacagtat----aatacaacaagtaactttatg 61
Query: 61 tataagctagtctctgattga 81
|||||||||||||||||||||
Sbjct: 62 tataagctagtctctgattga 82
>RF00928;mir-590;AAGV020627533.1/2369-2273 9361:Dasypus
novemcinctus (nine-banded armadillo)
Length = 97
Score = 60.0 bits (30), Expect = 4e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 48 ctgtaattttatgtataagctagtctctgattga 81
|||||||||||||||||| |||||||||||||||
Sbjct: 53 ctgtaattttatgtataaactagtctctgattga 86
>RF00928;mir-590;AAGW01523546.1/6054-5958 9986:Oryctolagus
cuniculus (rabbit)
Length = 97
Score = 60.0 bits (30), Expect = 4e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 1 agtcagaaatgagcttattcataaaagtgcagta 34
|||| |||||||||||||||||||||||||||||
Sbjct: 6 agtcggaaatgagcttattcataaaagtgcagta 39
>RF00928;mir-590;AAKN02032050.1/70084-69998 10141:Cavia porcellus
(domestic guinea pig)
Length = 87
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1 agtcagaaatgagcttattcataaaagtgc 30
|||||||| |||||||||||||||||||||
Sbjct: 2 agtcagaagtgagcttattcataaaagtgc 31
>RF00928;mir-590;AAGU02451779.1/3421-3513 9785:Loxodonta africana
(African savanna elephant)
Length = 93
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 48 ctgtaattttatgtataagctagtctctgattga 81
|||| ||||||||||||| ||||||||| |||||
Sbjct: 49 ctgtgattttatgtataaactagtctctcattga 82
