miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00877;mir-592;ABRQ01197780.1/1278-1365 9813:Procavia capensis
(cape rock hyrax)
Length = 88
Score = 151 bits (76), Expect = 2e-36
Identities = 85/88 (96%)
Strand = Plus / Plus
Query: 4 tattatgccatgacattgtgtcaatatgcgatgatgtgttgtgatggcacagcgtcatca 63
|||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1 tattatgctatgacgttgtgtcaatatgcgatgatgtgttgtgatggcgcagcgtcatca 60
Query: 64 cgtggtgacgcaacatcatgacgtaaga 91
||||||||||||||||||||||||||||
Sbjct: 61 cgtggtgacgcaacatcatgacgtaaga 88
>RF00877;mir-592;AAQQ01768898.1/161-74 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 88
Score = 111 bits (56), Expect = 2e-24
Identities = 80/88 (90%)
Strand = Plus / Plus
Query: 4 tattatgccatgacattgtgtcaatatgcgatgatgtgttgtgatggcacagcgtcatca 63
||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||
Sbjct: 1 tattatgccatgacattgtgtcagaatgcgatgactggttgcgatggcacagcgtcatca 60
Query: 64 cgtggtgacgcaacatcatgacgtaaga 91
||||| ||||||||||||||||| ||||
Sbjct: 61 cgtggagacgcaacatcatgacgaaaga 88
>RF00877;mir-592;AAPN01131115.1/15145-15229 9258:Ornithorhynchus
anatinus (platypus)
Length = 85
Score = 63.9 bits (32), Expect = 3e-10
Identities = 70/82 (85%), Gaps = 3/82 (3%)
Strand = Plus / Plus
Query: 4 tattatgccatgacattgtgtcaatatgcgatgatgtgttgtgatggcacagcgtcatca 63
|||||||||| ||| ||||||| |||| |||||||||||||||||||||| ||||||
Sbjct: 1 tattatgccacaacactgtgtcactatg---tgatgtgttgtgatggcacagcctcatca 57
Query: 64 cgtggtgacgcaacatcatgac 85
| | || | |||||||||||||
Sbjct: 58 catagtaatgcaacatcatgac 79
