miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01059;mir-598;AC118607.12/167329-167233 10090:Mus musculus
(house mouse)
Length = 97
Score = 157 bits (79), Expect = 2e-38
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 1 gctgatgctggcggtgatgccgatggtgcgagctgaaaatgggctgctacgtcatcgtcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 gctgatgctggcggtgatgccgatggtgcgagctgaaaatgggctgctacgtcatcgtcg 73
Query: 61 tcatcgttatcatcatcat 79
|||||||||||||||||||
Sbjct: 74 tcatcgttatcatcatcat 92
>RF01059;mir-598;AADA01227318.1/1437-1341 9598:Pan troglodytes
(chimpanzee)
Length = 97
Score = 105 bits (53), Expect = 8e-23
Identities = 71/77 (92%)
Strand = Plus / Plus
Query: 3 tgatgctggcggtgatgccgatggtgcgagctgaaaatgggctgctacgtcatcgtcgtc 62
|||||||||||||||| ||||||||| |||||| ||||||| |||||||||||||| |||
Sbjct: 16 tgatgctggcggtgatcccgatggtgtgagctggaaatggggtgctacgtcatcgttgtc 75
Query: 63 atcgttatcatcatcat 79
||||| |||||||||||
Sbjct: 76 atcgtcatcatcatcat 92
>RF01059;mir-598;AAGU02638220.1/6389-6484 9785:Loxodonta africana
(African savanna elephant)
Length = 96
Score = 101 bits (51), Expect = 1e-21
Identities = 73/79 (92%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 1 gctgatgctggcggtgatgccgatggtgcgagctgaaaatgggctgctacgtcatcgtcg 60
|||||||||||||||||||||||||||| |||||| |||| || |||||||||||||| |
Sbjct: 14 gctgatgctggcggtgatgccgatggtgggagctggaaatagg-tgctacgtcatcgttg 72
Query: 61 tcatcgttatcatcatcat 79
||||||| |||||||||||
Sbjct: 73 tcatcgtcatcatcatcat 91
>RF01059;mir-598;ABDC01461977.1/439-343 30608:Microcebus murinus
(gray mouse lemur)
Length = 97
Score = 67.9 bits (34), Expect = 2e-11
Identities = 67/78 (85%)
Strand = Plus / Plus
Query: 1 gctgatgctggcggtgatgccgatggtgcgagctgaaaatgggctgctacgtcatcgtcg 60
||||||||||||||||| ||||||| | |||||| | | || |||||||||||||| |
Sbjct: 14 gctgatgctggcggtgacaccgatggcgtgagctggagacagggtgctacgtcatcgttg 73
Query: 61 tcatcgttatcatcatca 78
||||||| ||||||||||
Sbjct: 74 tcatcgtcatcatcatca 91
>RF01059;mir-598;AAFC03106541.1/8060-7964 9913:Bos taurus (cattle)
Length = 97
Score = 61.9 bits (31), Expect = 1e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 1 gctgatgctggcggtgatgccgatggtgcgagctg 35
||||||||||| |||||||||||||||||||||||
Sbjct: 14 gctgatgctggtggtgatgccgatggtgcgagctg 48
>RF01059;mir-598;ABRM01023741.1/5416-5342 6085:Hydra
magnipapillata
Length = 75
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 50 cgtcatcgtcgtcatcgttatcatcatcat 79
||||||| |||||||| |||||||||||||
Sbjct: 41 cgtcatcatcgtcatcattatcatcatcat 12
>RF01059;mir-598;AABR04022525.1/3795-3700 10116:Rattus norvegicus
(Norway rat)
Length = 96
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 50 cgtcatcgtcgtcatcgttatcatcatcat 79
|||||||||||||||| | |||||||||||
Sbjct: 50 cgtcatcgtcgtcatcatcatcatcatcat 79
>RF01059;mir-598;AABR04000561.1/12890-12985 10116:Rattus
norvegicus (Norway rat)
Length = 96
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 50 cgtcatcgtcgtcatcgttatcatcatcat 79
|||||||||| ||||||| |||||||||||
Sbjct: 62 cgtcatcgtcatcatcgtcatcatcatcat 91
>RF01059;mir-598;AAHY01469015.1/759-665 10090:Mus musculus (house
mouse)
Length = 95
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 50 cgtcatcgtcgtcatcgttatcatcatcat 79
||||||| |||||||||| |||||||||||
Sbjct: 52 cgtcatcatcgtcatcgtcatcatcatcat 81
>RF01059;mir-598;AAZO01006288.1/10382-10458 121224:Pediculus
humanus corporis (human body louse)
Length = 77
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 50 cgtcatcgtcgtcatcgttatcatcatcat 79
|||||||||||||||| | |||||||||||
Sbjct: 47 cgtcatcgtcgtcatcatcatcatcatcat 18
>RF01059;mir-598;AC115598.2/34724-34823 44689:Dictyostelium
discoideum
Length = 100
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 50 cgtcatcgtcgtcatcgttatcatcatcat 79
|||| ||||||||||||| |||||||||||
Sbjct: 63 cgtcgtcgtcgtcatcgtcatcatcatcat 92
