miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00991;mir-599;AC121598.3/75982-76076 10090:Mus musculus (house
mouse)
Length = 95
Score = 174 bits (88), Expect = 1e-43
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 1 tgctgtccacagtgtatttgataagatgacataggagaggaacttctttcacctttgtgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tgctgtccacagtgtatttgataagatgacataggagaggaacttctttcacctttgtgt 67
Query: 61 cagtttatcaaacccatacctggatgac 88
||||||||||||||||||||||||||||
Sbjct: 68 cagtttatcaaacccatacctggatgac 95
>RF00991;mir-599;ABRQ01087343.1/1788-1694 9813:Procavia capensis
(cape rock hyrax)
Length = 95
Score = 87.7 bits (44), Expect = 2e-17
Identities = 74/84 (88%)
Strand = Plus / Plus
Query: 1 tgctgtccacagtgtatttgataagatgacataggagaggaacttctttcacctttgtgt 60
||||||||||||||| ||||||||| |||||| ||| |||| | |||||| ||||||
Sbjct: 8 tgctgtccacagtgtgtttgataagctgacatgggacaggatttcttttcactgttgtgt 67
Query: 61 cagtttatcaaacccatacctgga 84
||||||||||||||||||||||||
Sbjct: 68 cagtttatcaaacccatacctgga 91
>RF00991;mir-599;AAPY01575258.1/7264-7170 37347:Tupaia belangeri
(northern tree shrew)
Length = 95
Score = 77.8 bits (39), Expect = 2e-14
Identities = 75/87 (86%)
Strand = Plus / Plus
Query: 1 tgctgtccacagtgtatttgataagatgacataggagaggaacttctttcacctttgtgt 60
|||| |||||| ||| ||||||||| ||| |||||| ||| | || |||||| ||||||
Sbjct: 8 tgctatccacaatgtgtttgataagctgatataggacagggatttttttcactgttgtgt 67
Query: 61 cagtttatcaaacccatacctggatga 87
|||||||||||||||||| ||||||||
Sbjct: 68 cagtttatcaaacccatatctggatga 94
>RF00991;mir-599;AAQQ01055001.1/924-830 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 95
Score = 67.9 bits (34), Expect = 2e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 55 ttgtgtcagtttatcaaacccatacctggatgac 88
||||||||||||||||||||||||||||||||||
Sbjct: 62 ttgtgtcagtttatcaaacccatacctggatgac 95
>RF00991;mir-599;AAFR03006570.1/12574-12668 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 95
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 55 ttgtgtcagtttatcaaacccatacctggat 85
|||||||||||||||||||||||||||||||
Sbjct: 62 ttgtgtcagtttatcaaacccatacctggat 92
