miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00937;mir-653;AC161368.2/145297-145394 10090:Mus musculus
(house mouse)
Length = 98
Score = 168 bits (85), Expect = 7e-42
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 1 cattctttcagtgttgaaacaatctctactgaaccaagctccaaagcgagttcactggag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 cattctttcagtgttgaaacaatctctactgaaccaagctccaaagcgagttcactggag 62
Query: 61 tttgtttcagtattgcaggagtgct 85
|||||||||||||||||||||||||
Sbjct: 63 tttgtttcagtattgcaggagtgct 87
>RF00937;mir-653;AAKN02016831.1/11044-10947 10141:Cavia porcellus
(domestic guinea pig)
Length = 98
Score = 101 bits (51), Expect = 1e-21
Identities = 66/71 (92%)
Strand = Plus / Plus
Query: 7 ttcagtgttgaaacaatctctactgaaccaagctccaaagcgagttcactggagtttgtt 66
||||||||||||||| |||||||||||||| |||||| | | ||||||||||||||||||
Sbjct: 9 ttcagtgttgaaacactctctactgaaccaggctccacaccaagttcactggagtttgtt 68
Query: 67 tcagtattgca 77
|||||||||||
Sbjct: 69 tcagtattgca 79
>RF00937;mir-653;AAWR02013812.1/75511-75414 9796:Equus caballus
(horse)
Length = 98
Score = 89.7 bits (45), Expect = 5e-18
Identities = 69/77 (89%)
Strand = Plus / Plus
Query: 1 cattctttcagtgttgaaacaatctctactgaaccaagctccaaagcgagttcactggag 60
||||| ||||||||||||||||||||| |||||||| |||||||| |||||||||||
Sbjct: 3 cattccttcagtgttgaaacaatctctgctgaaccaggctccaaactacgttcactggag 62
Query: 61 tttgtttcagtattgca 77
||||||||| |||||||
Sbjct: 63 tttgtttcaatattgca 79
>RF00937;mir-653;ABRO01064908.1/1765-1668 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 98
Score = 89.7 bits (45), Expect = 5e-18
Identities = 69/77 (89%)
Strand = Plus / Plus
Query: 1 cattctttcagtgttgaaacaatctctactgaaccaagctccaaagcgagttcactggag 60
||||| ||||||||| || ||||||||| |||||||||||||||| | |||||| |||||
Sbjct: 3 cattccttcagtgttaaagcaatctctattgaaccaagctccaaaccaagttcattggag 62
Query: 61 tttgtttcagtattgca 77
||||||||| |||||||
Sbjct: 63 tttgtttcaatattgca 79
>RF00937;mir-653;AAQR01063642.1/1854-1758 30611:Otolemur garnettii
(small-eared galago)
Length = 97
Score = 87.7 bits (44), Expect = 2e-17
Identities = 72/80 (90%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 1 cattctttcagtgttgaaacaatctctactgaaccaagctccaaagcgagttcactggag 60
||||| |||||||||||||||||||||||||||| | ||| ||||| | ||||||||||
Sbjct: 3 cattccttcagtgttgaaacaatctctactgaacaaggcttcaaag-taattcactggag 61
Query: 61 tttgtttcagtattgcagga 80
||||||||| ||||||||||
Sbjct: 62 tttgtttcaatattgcagga 81
>RF00937;mir-653;AALT01658113.1/578-675 42254:Sorex araneus
(European shrew)
Length = 98
Score = 85.7 bits (43), Expect = 8e-17
Identities = 67/75 (89%)
Strand = Plus / Plus
Query: 1 cattctttcagtgttgaaacaatctctactgaaccaagctccaaagcgagttcactggag 60
|||| |||||||||||||||||||||| |||||||| || |||| | ||||||||||||
Sbjct: 3 cattttttcagtgttgaaacaatctctgctgaaccagactgcaaatcaagttcactggag 62
Query: 61 tttgtttcagtattg 75
||||||||| |||||
Sbjct: 63 tttgtttcaatattg 77
>RF00937;mir-653;AANN01380427.1/400-497 9365:Erinaceus europaeus
(western European hedgehog)
Length = 98
Score = 81.8 bits (41), Expect = 1e-15
Identities = 68/77 (88%)
Strand = Plus / Plus
Query: 1 cattctttcagtgttgaaacaatctctactgaaccaagctccaaagcgagttcactggag 60
||||| ||||||||||||||| |||| |||||||| ||||||| | ||||||||||||
Sbjct: 3 cattccttcagtgttgaaacattctcagctgaaccagactccaaaccaagttcactggag 62
Query: 61 tttgtttcagtattgca 77
||||||||| |||||||
Sbjct: 63 tttgtttcaatattgca 79
>RF00937;mir-653;ABRT010247111.1/6369-6272 9478:Tarsius syrichta
(Philippine tarsier)
Length = 98
Score = 81.8 bits (41), Expect = 1e-15
Identities = 68/77 (88%)
Strand = Plus / Plus
Query: 1 cattctttcagtgttgaaacaatctctactgaaccaagctccaaagcgagttcactggag 60
||||| |||||||||||||||| ||||||||||||| || |||| ||||||||||||
Sbjct: 3 cattccttcagtgttgaaacaaactctactgaaccagacttcaaatgaagttcactggag 62
Query: 61 tttgtttcagtattgca 77
||||||||| |||||||
Sbjct: 63 tttgtttcaatattgca 79
>RF00937;mir-653;ABRP01072941.1/3876-3780 132908:Pteropus vampyrus
(large flying fox)
Length = 97
Score = 73.8 bits (37), Expect = 3e-13
Identities = 68/77 (88%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 1 cattctttcagtgttgaaacaatctctactgaaccaagctccaaagcgagttcactggag 60
||||| ||||||| ||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 3 cattccttcagtgctgaaacaatctctactgaacc-ggctccaaacaaagttcactggag 61
Query: 61 tttgtttcagtattgca 77
|||||||| |||||||
Sbjct: 62 attgtttcaatattgca 78
>RF00937;mir-653;AAGW01691909.1/116-19 9986:Oryctolagus cuniculus
(rabbit)
Length = 98
Score = 58.0 bits (29), Expect = 2e-08
Identities = 65/77 (84%)
Strand = Plus / Plus
Query: 1 cattctttcagtgttgaaacaatctctactgaaccaagctccaaagcgagttcactggag 60
||||||||||||||||||||| ||||| |||| | ||| || | ||||||||||||
Sbjct: 3 cattctttcagtgttgaaacatcctctattgaattaggctttcaaccaagttcactggag 62
Query: 61 tttgtttcagtattgca 77
||||||||| |||||||
Sbjct: 63 tttgtttcaatattgca 79
>RF00937;mir-653;ABRR01013946.1/4018-3924 30538:Lama pacos
(alpaca)
Length = 95
Score = 56.0 bits (28), Expect = 7e-08
Identities = 54/62 (87%), Gaps = 3/62 (4%)
Strand = Plus / Plus
Query: 8 tcagtgttgaaacaatctctactgaaccaagctccaaagcgagttcactggagtttgttt 67
|||||||||||||||||||| |||||||| || ||| |||||||||||||||||||
Sbjct: 10 tcagtgttgaaacaatctctgctgaaccagattctaaa---agttcactggagtttgttt 66
Query: 68 ca 69
||
Sbjct: 67 ca 68
>RF00937;mir-653;ABRN01117807.1/19679-19585 9739:Tursiops
truncatus (bottlenosed dolphin)
Length = 95
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 8 tcagtgttgaaacaatctctactgaacca 36
|||||||||||||||||||| ||||||||
Sbjct: 10 tcagtgttgaaacaatctctgctgaacca 38
