miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;BAAF04093499.1/4339-4264 8090:Oryzias latipes
          (Japanese medaka)
          Length = 76

 Score =  143 bits (72), Expect = 5e-34
 Identities = 75/76 (98%)
 Strand = Plus / Plus

                                                                      
Query: 10 ccgggttgaggtagtaggttgtatggtttagagttacaccctgggagttaactgtacaac 69
          |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1  ccgggttgaggtagtaggttgtatggtttagaattacaccctgggagttaactgtacaac 60

                          
Query: 70 cttctagctttccttg 85
          ||||||||||||||||
Sbjct: 61 cttctagctttccttg 76




>RF00027;let-7;AAPN01238922.1/186-111 9258:Ornithorhynchus
          anatinus (platypus)
          Length = 76

 Score =  133 bits (67), Expect = 4e-31
 Identities = 73/75 (97%)
 Strand = Plus / Plus

                                                                      
Query: 10 ccgggttgaggtagtaggttgtatggtttagagttacaccctgggagttaactgtacaac 69
          |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 1  ccgggttgaggtagtaggttgtatggtttagagtcacaccccgggagttaactgtacaac 60

                         
Query: 70 cttctagctttcctt 84
          |||||||||||||||
Sbjct: 61 cttctagctttcctt 75




>RF00027;let-7;AAVX01338774.1/620-544 7868:Callorhinchus milii
          (ghost shark)
          Length = 77

 Score = 89.7 bits (45), Expect = 6e-18
 Identities = 66/73 (90%)
 Strand = Plus / Plus

                                                                      
Query: 10 ccgggttgaggtagtaggttgtatggtttagagttacaccctgggagttaactgtacaac 69
          ||||| |||||||||||||||||| ||||||| ||||| | ||||||||||||||||| |
Sbjct: 1  ccggggtgaggtagtaggttgtatagtttagaattacatcgtgggagttaactgtacagc 60

                       
Query: 70 cttctagctttcc 82
          || ||||||||||
Sbjct: 61 ctcctagctttcc 73




>RF00027;let-7;AAVX01007479.1/3161-3085 7868:Callorhinchus milii
          (ghost shark)
          Length = 77

 Score = 85.7 bits (43), Expect = 9e-17
 Identities = 61/67 (91%)
 Strand = Plus / Plus

                                                                      
Query: 16 tgaggtagtaggttgtatggtttagagttacaccctgggagttaactgtacaaccttcta 75
          |||||||||||||||||| |||||||| |||||| |||||| || ||||||||||| |||
Sbjct: 7  tgaggtagtaggttgtatagtttagagatacaccatgggagatagctgtacaacctccta 66

                 
Query: 76 gctttcc 82
          |||||||
Sbjct: 67 gctttcc 73




>RF00027;let-7;AAGU02067998.1/2847-2772 9785:Loxodonta africana
          (African savanna elephant)
          Length = 76

 Score = 81.8 bits (41), Expect = 1e-15
 Identities = 65/73 (89%)
 Strand = Plus / Plus

                                                                      
Query: 13 ggttgaggtagtaggttgtatggtttagagttacaccctgggagttaactgtacaacctt 72
          ||||||||||||||||||||| ||||||| ||||| |  ||||| |||||||||| ||| 
Sbjct: 4  ggttgaggtagtaggttgtatagtttagaattacatcaagggagataactgtacagcctc 63

                       
Query: 73 ctagctttccttg 85
          |||||||||||||
Sbjct: 64 ctagctttccttg 76




>RF00027;let-7;BX284646.4/46451-46375 7955:Danio rerio (zebrafish)
          Length = 77

 Score = 81.8 bits (41), Expect = 1e-15
 Identities = 65/73 (89%)
 Strand = Plus / Plus

                                                                      
Query: 11 cgggttgaggtagtaggttgtatggtttagagttacaccctgggagttaactgtacaacc 70
          |||| |||||||||||||||||| ||||||||||||| |  ||||| |||||||||| ||
Sbjct: 2  cgggatgaggtagtaggttgtatagtttagagttacaacacgggagataactgtacagcc 61

                       
Query: 71 ttctagctttcct 83
          | |||||||||||
Sbjct: 62 tcctagctttcct 74




>RF00027;let-7;CAAB01004143.1/18701-18777 31033:Takifugu rubripes
          Length = 77

 Score = 75.8 bits (38), Expect = 9e-14
 Identities = 62/70 (88%)
 Strand = Plus / Plus

                                                                      
Query: 13 ggttgaggtagtaggttgtatggtttagagttacaccctgggagttaactgtacaacctt 72
          ||||||||||||||||||||| ||| ||| ||||||||   ||| |||||||||||||| 
Sbjct: 4  ggttgaggtagtaggttgtatagttgagaattacacccccagagataactgtacaacctc 63

                    
Query: 73 ctagctttcc 82
          ||||||||||
Sbjct: 64 ctagctttcc 73




>RF00027;let-7;AAWZ01007717.1/43277-43200 28377:Anolis
          carolinensis (green anole)
          Length = 78

 Score = 67.9 bits (34), Expect = 2e-11
 Identities = 62/70 (88%), Gaps = 1/70 (1%)
 Strand = Plus / Plus

                                                                      
Query: 14 gttgaggtagtaggttgtatggtttagagttacaccct-gggagttaactgtacaacctt 72
          |||||||||||||||||||||||||||| | ||||| |  |||| |||||||||| ||| 
Sbjct: 5  gttgaggtagtaggttgtatggtttagaataacaccatcaggagataactgtacagcctc 64

                    
Query: 73 ctagctttcc 82
          ||||||||||
Sbjct: 65 ctagctttcc 74




>RF00027;let-7;BAAE01285721.1/657-581 8090:Oryzias latipes
          (Japanese medaka)
          Length = 77

 Score = 67.9 bits (34), Expect = 2e-11
 Identities = 61/70 (87%)
 Strand = Plus / Plus

                                                                      
Query: 13 ggttgaggtagtaggttgtatggtttagagttacaccctgggagttaactgtacaacctt 72
          ||||||||||||||||||||| ||| ||||| |||||   |||| |||||||||| ||| 
Sbjct: 4  ggttgaggtagtaggttgtatagttcagagtgacaccacaggagataactgtacagcctc 63

                    
Query: 73 ctagctttcc 82
          ||||||||||
Sbjct: 64 ctagctttcc 73




>RF00027;let-7;BX663520.9/232739-232815 7955:Danio rerio
          (zebrafish)
          Length = 77

 Score = 61.9 bits (31), Expect = 1e-09
 Identities = 58/67 (86%)
 Strand = Plus / Plus

                                                                      
Query: 16 tgaggtagtaggttgtatggtttagagttacaccctgggagttaactgtacaaccttcta 75
          |||||||||||||||||| ||||||| | ||| |   |||| |||||||||||||| |||
Sbjct: 7  tgaggtagtaggttgtatagtttagaataacatcactggagataactgtacaacctccta 66

                 
Query: 76 gctttcc 82
          |||||||
Sbjct: 67 gctttcc 73




>RF00027;let-7;BAAE01198743.1/2195-2119 8090:Oryzias latipes
          (Japanese medaka)
          Length = 77

 Score = 58.0 bits (29), Expect = 2e-08
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                      
Query: 16 tgaggtagtaggttgtatggtttagagttacaccctgggagttaactgtacaaccttcta 75
          ||||||||| |||||||| ||| ||| | |||||| ||||| | |||||||||||| |||
Sbjct: 7  tgaggtagtgggttgtatagttgagaatgacaccccgggagatgactgtacaacctccta 66

               
Query: 76 gcttt 80
          |||||
Sbjct: 67 gcttt 71




>RF00027;let-7;ABEP02005607.1/36672-36748 7739:Branchiostoma
          floridae (Florida lancelet)
          Length = 77

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 60/71 (84%)
 Strand = Plus / Plus

                                                                      
Query: 16 tgaggtagtaggttgtatggtttagagttacaccctgggagttaactgtacaaccttcta 75
          |||||||||||||||||| ||| |||  |||| | | |||| ||||||| |||||| |||
Sbjct: 7  tgaggtagtaggttgtatagttgagaagtacatcattggagataactgtgcaacctgcta 66

                     
Query: 76 gctttccttgg 86
          ||| |||||||
Sbjct: 67 gctctccttgg 77




>RF00027;let-7;AANH01000597.1/43752-43676 69293:Gasterosteus
          aculeatus (three-spined stickleback)
          Length = 77

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 59/70 (84%)
 Strand = Plus / Plus

                                                                      
Query: 13 ggttgaggtagtaggttgtatggtttagagttacaccctgggagttaactgtacaacctt 72
          ||||||||||||||||||||| ||| ||||| || ||   |||| | |||||||| ||| 
Sbjct: 4  ggttgaggtagtaggttgtatagttcagagtgacgccacaggagatgactgtacagcctc 63

                    
Query: 73 ctagctttcc 82
          ||||||||||
Sbjct: 64 ctagctttcc 73




>RF00027;let-7;BAAF04118326.1/6305-6226 8090:Oryzias latipes
          (Japanese medaka)
          Length = 80

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 53 ggagttaactgtacaaccttctagctttcc 82
          |||| |||||||||||||||||||||||||
Sbjct: 47 ggagataactgtacaaccttctagctttcc 76




>RF00027;let-7;BAAE01140498.1/764-841 8090:Oryzias latipes
          (Japanese medaka)
          Length = 78

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 58 taactgtacaaccttctagctttcc 82
          |||||||||||||||||||||||||
Sbjct: 52 taactgtacaaccttctagctttcc 76




>RF00027;let-7;AAUQ01090552.1/622-543 408171:epibiont metagenome
          Length = 80

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 59 aactgtacaaccttctagctttcc 82
          ||||||||||||||||||||||||
Sbjct: 52 aactgtacaaccttctagctttcc 75




>RF00027;let-7;ABEG01002465.1/18268-18339 135651:Caenorhabditis
          brenneri
          Length = 72

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 14 gttgaggtagtaggttgtatggtttaga 41
          |||||||||||||||||||| |||||||
Sbjct: 4  gttgaggtagtaggttgtatagtttaga 31




>RF00027;let-7;AAGD02006482.1/22892-22821 31234:Caenorhabditis
          remanei
          Length = 72

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 16 tgaggtagtaggttgtatggtttaga 41
          |||||||||||||||||| |||||||
Sbjct: 6  tgaggtagtaggttgtatagtttaga 31




>RF00027;let-7;AC084471.1/10992-10920 6238:Caenorhabditis briggsae
          Length = 73

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 16 tgaggtagtaggttgtatggtttaga 41
          |||||||||||||||||| |||||||
Sbjct: 6  tgaggtagtaggttgtatagtttaga 31