miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;ABRQ01826413.1/555-477 9813:Procavia capensis (cape
rock hyrax)
Length = 79
Score = 109 bits (55), Expect = 6e-24
Identities = 73/79 (92%)
Strand = Plus / Plus
Query: 8 ttggggtgaggtagtaggttgtatggttttgggctctgccccgctctgcggtaactatac 67
|||||||||||||||||||||||| |||| ||||||||||| ||| || | |||||||||
Sbjct: 1 ttggggtgaggtagtaggttgtatagtttggggctctgccctgctttgggataactatac 60
Query: 68 aatctactgtctttcctga 86
|||||||||||||||||||
Sbjct: 61 aatctactgtctttcctga 79
>RF00027;let-7;AAKN02054982.1/20495-20418 10141:Cavia porcellus
(domestic guinea pig)
Length = 78
Score = 93.7 bits (47), Expect = 4e-19
Identities = 72/79 (91%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 8 ttggggtgaggtagtaggttgtatggttttgggctctgccccgctctgcggtaactatac 67
|||||||||||||||||||||||| |||| |||||| |||| ||| || | |||||||||
Sbjct: 1 ttggggtgaggtagtaggttgtatagtttggggctccgccctgctgtg-gctaactatac 59
Query: 68 aatctactgtctttcctga 86
|||||||||||||||||||
Sbjct: 60 aatctactgtctttcctga 78
>RF00027;let-7;AAPN01367903.1/288-368 9258:Ornithorhynchus
anatinus (platypus)
Length = 81
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 59 taactatacaatctactgtctttcctga 86
||||||||||||||||||||||||||||
Sbjct: 54 taactatacaatctactgtctttcctga 81
>RF00027;let-7;AAVX01586337.1/294-214 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 59 taactatacaatctactgtctttcctga 86
||||||||||||||||||||||||||||
Sbjct: 54 taactatacaatctactgtctttcctga 81
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 8 ttggggtgaggtagtaggttgtatggtttt 37
||||| |||||||||||||||||| |||||
Sbjct: 1 ttgggatgaggtagtaggttgtatagtttt 30
>RF00027;let-7;AANN01118339.1/762-680 9365:Erinaceus europaeus
(western European hedgehog)
Length = 83
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 59 taactatacaatctactgtctttcct 84
||||||||||||||||||||||||||
Sbjct: 56 taactatacaatctactgtctttcct 81
>RF00027;let-7;AAWZ01028874.1/2440-2520 28377:Anolis carolinensis
(green anole)
Length = 81
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 59 taactatacaatctactgtctttcct 84
||||||||||||||||||||||||||
Sbjct: 54 taactatacaatctactgtctttcct 79
>RF00027;let-7;CR936540.12/43970-44052 7955:Danio rerio
(zebrafish)
Length = 83
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 59 taactatacaatctactgtctttcct 84
||||||||||||||||||||||||||
Sbjct: 56 taactatacaatctactgtctttcct 81
>RF00027;let-7;ABPM01013261.1/416-335 106582:Maylandia zebra
(zebra mbuna)
Length = 82
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 59 taactatacaatctactgtctttcct 84
||||||||||||||||||||||||||
Sbjct: 55 taactatacaatctactgtctttcct 80
>RF00027;let-7;BAAF04050050.1/5012-4932 8090:Oryzias latipes
(Japanese medaka)
Length = 81
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 8 ttggggtgaggtagtaggttgtatggtttt 37
|||||||||||||||||||||||| |||||
Sbjct: 1 ttggggtgaggtagtaggttgtatagtttt 30
>RF00027;let-7;BAAE01055973.1/4881-4962 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 8 ttggggtgaggtagtaggttgtatggtttt 37
|||||||||||||||||||||||| |||||
Sbjct: 1 ttggggtgaggtagtaggttgtatagtttt 30
>RF00027;let-7;AAFR03057393.1/5692-5610 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 83
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 8 ttggggtgaggtagtaggttgtatggttt 36
|||||||||||||||||||||||| ||||
Sbjct: 1 ttggggtgaggtagtaggttgtatagttt 29
>RF00027;let-7;AANH01002639.1/21280-21198 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 83
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 59 taactatacaatctactgtctttcc 83
|||||||||||||||||||||||||
Sbjct: 56 taactatacaatctactgtctttcc 80
>RF00027;let-7;BAAF04002563.1/3069-3152 8090:Oryzias latipes
(Japanese medaka)
Length = 84
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 59 taactatacaatctactgtctttcc 83
|||||||||||||||||||||||||
Sbjct: 57 taactatacaatctactgtctttcc 81
>RF00027;let-7;CR847944.11/44347-44429 7955:Danio rerio
(zebrafish)
Length = 83
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 59 taactatacaatctactgtctttc 82
||||||||||||||||||||||||
Sbjct: 55 taactatacaatctactgtctttc 78
>RF00027;let-7;AAVX01156403.1/1100-1020 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 59 taactatacaatctactgtctttcctga 86
||||||| ||||||||||||||||||||
Sbjct: 54 taactatgcaatctactgtctttcctga 81
>RF00027;let-7;AAVX01108779.1/886-806 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 59 taactatacaatctactgtctttc 82
||||||||||||||||||||||||
Sbjct: 54 taactatacaatctactgtctttc 77
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 8 ttggggtgaggtagtaggttgtatggtttt 37
||||| |||||||||||||||||| |||||
Sbjct: 1 ttgggatgaggtagtaggttgtatagtttt 30
>RF00027;let-7;AAPN01238922.1/186-111 9258:Ornithorhynchus
anatinus (platypus)
Length = 76
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 14 tgaggtagtaggttgtatggttt 36
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatggttt 29
>RF00027;let-7;AAQR01020418.1/249-164 30611:Otolemur garnettii
(small-eared galago)
Length = 86
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 10 ggggtgaggtagtaggttgtatggttt 36
|||||||||||||||||||| ||||||
Sbjct: 3 ggggtgaggtagtaggttgtgtggttt 29
>RF00027;let-7;AAGW01230269.1/1770-1854 9986:Oryctolagus cuniculus
(rabbit)
Length = 85
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 10 ggggtgaggtagtaggttgtatggttt 36
|||||||||||||||||||| ||||||
Sbjct: 3 ggggtgaggtagtaggttgtgtggttt 29
>RF00027;let-7;AAWZ01007717.1/43277-43200 28377:Anolis
carolinensis (green anole)
Length = 78
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 14 tgaggtagtaggttgtatggttt 36
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatggttt 29
>RF00027;let-7;BAAF04093499.1/4339-4264 8090:Oryzias latipes
(Japanese medaka)
Length = 76
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 14 tgaggtagtaggttgtatggttt 36
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatggttt 29
>RF00027;let-7;AAVX01338774.1/620-544 7868:Callorhinchus milii
(ghost shark)
Length = 77
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 10 ggggtgaggtagtaggttgtatggttt 36
|||||||||||||||||||||| ||||
Sbjct: 3 ggggtgaggtagtaggttgtatagttt 29
>RF00027;let-7;CAAB01000128.1/27883-27800 31033:Takifugu rubripes
Length = 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 gggtgaggtagtaggttgtatggttt 36
||||||||||||||||||||| ||||
Sbjct: 4 gggtgaggtagtaggttgtatagttt 29
>RF00027;let-7;CAAB01006742.1/7725-7806 31033:Takifugu rubripes
Length = 82
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 59 taactatacaatctactgtctttcct 84
|||||||||| |||||||||||||||
Sbjct: 55 taactatacagtctactgtctttcct 80
>RF00027;let-7;AANH01001398.1/49056-49141 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 gggtgaggtagtaggttgtatggttt 36
||||||||||||||||||| ||||||
Sbjct: 4 gggtgaggtagtaggttgtgtggttt 29
>RF00027;let-7;BAAE01151389.1/288-202 8090:Oryzias latipes
(Japanese medaka)
Length = 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 gggtgaggtagtaggttgtatggttt 36
||||||||||||||||||||| ||||
Sbjct: 4 gggtgaggtagtaggttgtatagttt 29
>RF00027;let-7;BAAE01218263.1/598-683 8090:Oryzias latipes
(Japanese medaka)
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 gggtgaggtagtaggttgtatggttt 36
||||||||||||||||||| ||||||
Sbjct: 4 gggtgaggtagtaggttgtgtggttt 29
>RF00027;let-7;BAAF04096587.1/14029-13948 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 12 ggtgaggtagtaggttgtatggtttt 37
|||||||||||||||||||| |||||
Sbjct: 5 ggtgaggtagtaggttgtatagtttt 30
>RF00027;let-7;BAAF04096587.1/14346-14265 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 59 taactatacaatctactgtctttcct 84
|||||||||| |||||||||||||||
Sbjct: 55 taactatacagtctactgtctttcct 80
>RF00027;let-7;AAVX01007479.1/3161-3085 7868:Callorhinchus milii
(ghost shark)
Length = 77
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 gggtgaggtagtaggttgtatggttt 36
||||||||||||||||||||| ||||
Sbjct: 4 gggtgaggtagtaggttgtatagttt 29
