miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;AADN02013953.1/13719-13633 9031:Gallus gallus
(chicken)
Length = 87
Score = 149 bits (75), Expect = 7e-36
Identities = 84/87 (96%)
Strand = Plus / Plus
Query: 2 tcagagtgaggtagtagattgtatagttgtggggtagtgattttaccctgtttaggagat 61
|||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||
Sbjct: 1 tcagagtgaggtagtagattgtatagttgtagggtagttattttaccctgttcaggagat 60
Query: 62 aactatacaatctattgccttccctga 88
|||||||||||||||||||||||||||
Sbjct: 61 aactatacaatctattgccttccctga 87
>RF00027;let-7;AANH01006181.1/186306-186220 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 87
Score = 129 bits (65), Expect = 6e-30
Identities = 77/81 (95%)
Strand = Plus / Plus
Query: 8 tgaggtagtagattgtatagttgtggggtagtgattttaccctgtttaggagataactat 67
|||||||||||||||||||||| ||||||||||||||| |||||||| | ||||||||||
Sbjct: 7 tgaggtagtagattgtatagttttggggtagtgattttgccctgtttggaagataactat 66
Query: 68 acaatctattgccttccctga 88
|||||||||||||||||||||
Sbjct: 67 acaatctattgccttccctga 87
>RF00027;let-7;AAPN01191849.1/6200-6287 9258:Ornithorhynchus
anatinus (platypus)
Length = 88
Score = 101 bits (51), Expect = 1e-21
Identities = 79/87 (90%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 3 cagagtgaggtagtagattgtatagttgtg-gggtagtgattttaccctgtttaggagat 61
||||||||||||||||||||||||||| | ||||||| |||||| ||| || ||||||
Sbjct: 2 cagagtgaggtagtagattgtatagtttttagggtagtaattttatccttttccggagat 61
Query: 62 aactatacaatctattgccttccctga 88
|||||||||||||||||||||||||||
Sbjct: 62 aactatacaatctattgccttccctga 88
>RF00027;let-7;AAVX01031590.1/1741-1655 7868:Callorhinchus milii
(ghost shark)
Length = 87
Score = 67.9 bits (34), Expect = 2e-11
Identities = 73/86 (84%)
Strand = Plus / Plus
Query: 3 cagagtgaggtagtagattgtatagttgtggggtagtgattttaccctgtttaggagata 62
|||||||||||||||| |||| ||||| ||||||||||||| || | ||||||||
Sbjct: 2 cagagtgaggtagtaggttgtgtagtttcagggtagtgatttttgccccatcaggagata 61
Query: 63 actatacaatctattgccttccctga 88
||||||||| ||| ||||||||||||
Sbjct: 62 actatacaacctactgccttccctga 87
>RF00027;let-7;BX897734.11/94677-94763 7955:Danio rerio
(zebrafish)
Length = 87
Score = 60.0 bits (30), Expect = 5e-09
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 7 gtgaggtagtagattgtatagttgtggggtagtgattttaccctgtttaggagataacta 66
|||||||||||| |||||||||| | || || ||| |||||||| ||| ||||||||
Sbjct: 6 gtgaggtagtaggttgtatagtttggtgggagggatcaaaccctgttcaggtgataacta 65
Query: 67 tacaatctattgccttcc 84
|||| |||||||||||||
Sbjct: 66 tacagtctattgccttcc 83
>RF00027;let-7;BAAE01151389.1/288-202 8090:Oryzias latipes
(Japanese medaka)
Length = 87
Score = 56.0 bits (28), Expect = 8e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 53 ttaggagataactatacaatctattgccttccctga 88
||||| |||||||||||| |||||||||||||||||
Sbjct: 52 ttaggtgataactatacagtctattgccttccctga 87
>RF00027;let-7;AAGU02300353.1/1892-1804 9785:Loxodonta africana
(African savanna elephant)
Length = 89
Score = 52.0 bits (26), Expect = 1e-06
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 5 gagtgaggtagtagattgtatagttgtggggtagtgatttta 46
||||||||||||| |||||| |||||||||||| |||||||
Sbjct: 4 gagtgaggtagtaagttgtattgttgtggggtagggatttta 45
>RF00027;let-7;CR847944.11/44965-45050 7955:Danio rerio
(zebrafish)
Length = 86
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 59 gataactatacaatctattgccttccctga 88
|||||||||||| |||||||||||||||||
Sbjct: 57 gataactatacagtctattgccttccctga 86
>RF00027;let-7;AANH01001398.1/49056-49141 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 86
Score = 52.0 bits (26), Expect = 1e-06
Identities = 69/82 (84%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 7 gtgaggtagtagattgtatagttgtggggtagtgattttaccctgtttaggagataacta 66
|||||||||||| |||| | ||| |||||||||||||| ||| | | || |||||||||
Sbjct: 6 gtgaggtagtaggttgtgtggtttcggggtagtgattttgccc-gatcagaagataacta 64
Query: 67 tacaatctattgccttccctga 88
||||| || ||||||||||||
Sbjct: 65 tacaacatactgccttccctga 86
>RF00027;let-7;AAPN01367903.1/288-368 9258:Ornithorhynchus
anatinus (platypus)
Length = 81
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 8 tgaggtagtagattgtatagttgtggggt 36
||||||||||||||| |||||||||||||
Sbjct: 7 tgaggtagtagattgaatagttgtggggt 35
>RF00027;let-7;CAAB01006742.1/7725-7806 31033:Takifugu rubripes
Length = 82
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 8 tgaggtagtagattgtatagttgtggggt 36
||||||||||||||| |||||||||||||
Sbjct: 7 tgaggtagtagattgaatagttgtggggt 35
>RF00027;let-7;ABPM01013261.1/416-335 106582:Maylandia zebra
(zebra mbuna)
Length = 82
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 8 tgaggtagtagattgtatagttgtggggt 36
||||||||||||||| |||||||||||||
Sbjct: 7 tgaggtagtagattgaatagttgtggggt 35
>RF00027;let-7;AANH01002639.1/21280-21198 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 83
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 8 tgaggtagtagattgtatagttgtggggt 36
||||||||||||||| |||||||||||||
Sbjct: 7 tgaggtagtagattgaatagttgtggggt 35
>RF00027;let-7;BAAF04096587.1/14346-14265 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 8 tgaggtagtagattgtatagttgtggggt 36
||||||||||||||| |||||||||||||
Sbjct: 7 tgaggtagtagattgaatagttgtggggt 35
>RF00027;let-7;BAAF04002563.1/3069-3152 8090:Oryzias latipes
(Japanese medaka)
Length = 84
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 8 tgaggtagtagattgtatagttgtggggt 36
||||||||||||||| |||||||||||||
Sbjct: 7 tgaggtagtagattgaatagttgtggggt 35
>RF00027;let-7;AAVX01156403.1/1100-1020 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 8 tgaggtagtagattgtatagttgtg 32
|||||||||||||||||||||||||
Sbjct: 7 tgaggtagtagattgtatagttgtg 31
>RF00027;let-7;AAQR01020418.1/249-164 30611:Otolemur garnettii
(small-eared galago)
Length = 86
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 58 agataactatacaatctattgccttccctga 88
|||||||||||||| ||| ||||||||||||
Sbjct: 56 agataactatacaacctactgccttccctga 86
>RF00027;let-7;ABQF01051678.1/9631-9544 59729:Taeniopygia guttata
Length = 88
Score = 46.1 bits (23), Expect = 7e-05
Identities = 66/79 (83%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 7 gtgaggtagtagattgtatagttgtggggtagtgattttaccctgttt-aggagataact 65
|||||||||||| |||||||||| | || || ||||| | || ||| ||| |||||||
Sbjct: 6 gtgaggtagtaggttgtatagtttggtgggagggatttgatcccatttcaggtgataact 65
Query: 66 atacaatctattgccttcc 84
||||| |||||||||||||
Sbjct: 66 atacagtctattgccttcc 84
>RF00027;let-7;CAAB01000053.1/115251-115164 31033:Takifugu
rubripes
Length = 88
Score = 46.1 bits (23), Expect = 7e-05
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 46 accctgtttaggagataactatacaatctattgccttcc 84
|||||||| ||||||||||||||||| || ||||||||
Sbjct: 46 accctgttcaggagataactatacaacttactgccttcc 84
>RF00027;let-7;ABRQ01114152.1/454-374 9813:Procavia capensis (cape
rock hyrax)
Length = 81
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 tgaggtagtagattgtatagtt 29
||||||||||||||||||||||
Sbjct: 7 tgaggtagtagattgtatagtt 28
>RF00027;let-7;AAWZ01028874.1/2440-2520 28377:Anolis carolinensis
(green anole)
Length = 81
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 tgaggtagtagattgtatagtt 29
||||||||||||||||||||||
Sbjct: 7 tgaggtagtagattgtatagtt 28
>RF00027;let-7;AAWZ01027397.1/1152-1066 28377:Anolis carolinensis
(green anole)
Length = 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 55 aggagataactatacaatctattgccttcc 84
||||||||||||||||| ||| ||||||||
Sbjct: 54 aggagataactatacaacctactgccttcc 83
>RF00027;let-7;AAWZ01028874.1/2915-3002 28377:Anolis carolinensis
(green anole)
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 7 gtgaggtagtagattgtatagttgtggggtagtgattt 44
||||||||||| |||||| |||||||||||| |||||
Sbjct: 6 gtgaggtagtaagttgtattgttgtggggtagggattt 43
>RF00027;let-7;AADN02044881.1/4561-4474 9031:Gallus gallus
(chicken)
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 59 gataactatacaatctattgccttcc 84
|||||||||||| |||||||||||||
Sbjct: 59 gataactatacagtctattgccttcc 84
>RF00027;let-7;CR847944.11/44347-44429 7955:Danio rerio
(zebrafish)
Length = 83
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 8 tgaggtagtagattgtatagttgtgg 33
||||||||||||||| ||||||||||
Sbjct: 7 tgaggtagtagattgaatagttgtgg 32
>RF00027;let-7;CR936540.12/43970-44052 7955:Danio rerio
(zebrafish)
Length = 83
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 8 tgaggtagtagattgtatagttgtgg 33
||||||||||||||| ||||||||||
Sbjct: 7 tgaggtagtagattgaatagttgtgg 32
>RF00027;let-7;BX664745.13/143600-143510 7955:Danio rerio
(zebrafish)
Length = 91
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 55 aggagataactatacaatctattgccttcc 84
|||||||||||||||||| || ||||||||
Sbjct: 58 aggagataactatacaatttactgccttcc 87
>RF00027;let-7;CAAB01000128.1/27883-27800 31033:Takifugu rubripes
Length = 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 59 gataactatacaatctattgccttcc 84
|||||||||||| |||||||||||||
Sbjct: 55 gataactatacagtctattgccttcc 80
