miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;BAAF04035801.1/1686-1772 8090:Oryzias latipes
          (Japanese medaka)
          Length = 87

 Score =  129 bits (65), Expect = 6e-30
 Identities = 80/85 (94%)
 Strand = Plus / Plus

                                                                      
Query: 1  ctggctgaggtagtagtttgtgctgttggtcgggttgtgacattgcccgctgtggagata 60
          |||||||||||||||||||||||||||||| |||||| |||| |||||||| ||||||| 
Sbjct: 2  ctggctgaggtagtagtttgtgctgttggttgggttgagacactgcccgctatggagatg 61

                                   
Query: 61 actgcgcaagctactgccttgctag 85
          |||||||||||||||||||||||||
Sbjct: 62 actgcgcaagctactgccttgctag 86




>RF00027;let-7;CAAB01000076.1/26328-26242 31033:Takifugu rubripes
          Length = 87

 Score =  101 bits (51), Expect = 1e-21
 Identities = 75/83 (90%)
 Strand = Plus / Plus

                                                                      
Query: 1  ctggctgaggtagtagtttgtgctgttggtcgggttgtgacattgcccgctgtggagata 60
          ||||||||||||||| ||||||||||||||||||||||   |||||||  ||||||||| 
Sbjct: 2  ctggctgaggtagtattttgtgctgttggtcgggttgtcctattgccccttgtggagatg 61

                                 
Query: 61 actgcgcaagctactgccttgct 83
          ||||||||| |||||||||||||
Sbjct: 62 actgcgcaatctactgccttgct 84




>RF00027;let-7;AANH01007768.1/28424-28513 69293:Gasterosteus
          aculeatus (three-spined stickleback)
          Length = 90

 Score = 87.7 bits (44), Expect = 2e-17
 Identities = 69/76 (90%), Gaps = 1/76 (1%)
 Strand = Plus / Plus

                                                                      
Query: 6  tgaggtagtagtttgtgctgttggtcgggttgtgacattg-cccgctgtggagataactg 64
          ||||||||||||||||||||||||||||||||| | |||| |||| | ||||||| ||||
Sbjct: 7  tgaggtagtagtttgtgctgttggtcgggttgtcatattgccccgttttggagatgactg 66

                          
Query: 65 cgcaagctactgcctt 80
          ||||| ||||||||||
Sbjct: 67 cgcaatctactgcctt 82




>RF00027;let-7;BAAE01140557.1/855-941 8090:Oryzias latipes
          (Japanese medaka)
          Length = 87

 Score = 69.9 bits (35), Expect = 5e-12
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                             
Query: 1  ctggctgaggtagtagtttgtgctgttggtcgggt 35
          |||||||||||||||||||||||||||||||||||
Sbjct: 2  ctggctgaggtagtagtttgtgctgttggtcgggt 36




>RF00027;let-7;BAAF04117990.1/808-722 8090:Oryzias latipes
          (Japanese medaka)
          Length = 87

 Score = 65.9 bits (33), Expect = 8e-11
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                           
Query: 3  ggctgaggtagtagtttgtgctgttggtcgggt 35
          |||||||||||||||||||||||||||||||||
Sbjct: 4  ggctgaggtagtagtttgtgctgttggtcgggt 36