miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00053;mir-7;AC026385.19/122238-122323 10090:Mus musculus (house
mouse)
Length = 86
Score = 155 bits (78), Expect = 1e-37
Identities = 84/86 (97%)
Strand = Plus / Plus
Query: 15 gagccaatgctatgtggaagacttgtgattttgttgttctgatatgatatgacaacaagt 74
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gagccagtgctatgtggaagacttgtgattttgttgttctgatatgatatgacaacaagt 60
Query: 75 cacagccagcctcatagagtggactc 100
||||||||||||||||| ||||||||
Sbjct: 61 cacagccagcctcatagcgtggactc 86
>RF00053;mir-7;ABRQ01582202.1/711-627 9813:Procavia capensis (cape
rock hyrax)
Length = 85
Score = 99.6 bits (50), Expect = 7e-21
Identities = 71/78 (91%)
Strand = Plus / Plus
Query: 22 tgctatgtggaagacttgtgattttgttgttctgatatgatatgacaacaagtcacagcc 81
|||| ||||||||||| ||||||||||||||||||||| | |||||||||| ||||||||
Sbjct: 8 tgctgtgtggaagactagtgattttgttgttctgatataaaatgacaacaaatcacagcc 67
Query: 82 agcctcatagagtggact 99
||||||||| |||||||
Sbjct: 68 tgcctcatagcgtggact 85
>RF00053;mir-7;AAGV020451722.1/1358-1272 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 87
Score = 89.7 bits (45), Expect = 7e-18
Identities = 69/77 (89%)
Strand = Plus / Plus
Query: 22 tgctatgtggaagacttgtgattttgttgttctgatatgatatgacaacaagtcacagcc 81
|||||||||||||||| ||||||||||||||||||| | ||||||||||| ||||||||
Sbjct: 9 tgctatgtggaagactagtgattttgttgttctgatgtactatgacaacaaatcacagcc 68
Query: 82 agcctcatagagtggac 98
|||||| || ||||||
Sbjct: 69 ggcctcacagcgtggac 85
>RF00053;mir-7;AANU01180350.1/1124-1208 9544:Macaca mulatta
(rhesus monkey)
Length = 85
Score = 83.8 bits (42), Expect = 4e-16
Identities = 63/70 (90%)
Strand = Plus / Plus
Query: 22 tgctatgtggaagacttgtgattttgttgttctgatatgatatgacaacaagtcacagcc 81
|||| ||||||||||| ||||||||||||||||||| || || |||||||| ||||||||
Sbjct: 8 tgctgtgtggaagactagtgattttgttgttctgatgtgctacgacaacaaatcacagcc 67
Query: 82 agcctcatag 91
|||||||||
Sbjct: 68 ggcctcatag 77
>RF00053;mir-7;AY866137.1/489-573 9593:Gorilla gorilla (Western
Gorilla)
Length = 85
Score = 77.8 bits (39), Expect = 3e-14
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 22 tgctatgtggaagacttgtgattttgttgttctgatatgatatgacaacaagtcacagcc 81
|||| ||||||||||| ||||||||||||||||||| | || |||||||||||||||||
Sbjct: 8 tgctgtgtggaagactagtgattttgttgttctgatgtactacgacaacaagtcacagcc 67
Query: 82 agcctca 88
||||||
Sbjct: 68 ggcctca 74
>RF00053;mir-7;AAKN02057383.1/83234-83150 10141:Cavia porcellus
(domestic guinea pig)
Length = 85
Score = 69.9 bits (35), Expect = 7e-12
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 27 tgtggaagacttgtgattttgttgttctgatatgatatgacaacaagtcacagcc 81
||||||||||| ||||||||||||||||||| | |||||||||||||||||||
Sbjct: 13 tgtggaagactagtgattttgttgttctgatgttggatgacaacaagtcacagcc 67
>RF00053;mir-7;ABQO011206777.1/724-635 9315:Macropus eugenii
(tammar wallaby)
Length = 90
Score = 52.0 bits (26), Expect = 2e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 20 aatgctatgtggaagacttgtgattttgttgttctgat 57
|||||| | ||||||||| |||||||||||||||||||
Sbjct: 7 aatgctgtatggaagactagtgattttgttgttctgat 44
>RF00053;mir-7;ABRO01388990.1/1540-1457 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 84
Score = 52.0 bits (26), Expect = 2e-06
Identities = 54/62 (87%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 27 tgtggaagacttgtgattttgttgttctgatatgatatgacaacaagtcacagccagcct 86
||||||||||| |||||||||||||||| || ||||||||||||||||||| ||||
Sbjct: 13 tgtggaagactggtgattttgttgttctaat-caccatgacaacaagtcacagccggcct 71
Query: 87 ca 88
||
Sbjct: 72 ca 73
>RF00053;mir-7;CU468920.7/50067-49977 7955:Danio rerio (zebrafish)
Length = 91
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 27 tgtggaagacttgtgattttgttgtt 52
||||||||||||||||||||||||||
Sbjct: 14 tgtggaagacttgtgattttgttgtt 39
>RF00053;mir-7;AAQA01000033.1/109356-109276 6279:Brugia malayi
Length = 81
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 28 gtggaagacttgtgattttgttgtt 52
|||||||||||||||||||||||||
Sbjct: 11 gtggaagacttgtgattttgttgtt 35
>RF00053;mir-7;AAWZ01035321.1/1521-1431 28377:Anolis carolinensis
(green anole)
Length = 91
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 28 gtggaagacttgtgattttgttgttctga 56
|||||||||| ||||||||||||||||||
Sbjct: 14 gtggaagactagtgattttgttgttctga 42
>RF00053;mir-7;AAWR02020437.1/482-565 9796:Equus caballus (horse)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 22 tgctatgtggaagacttgtgattttgttgttctgatatgatatgacaacaagtcac 77
|||| ||||||||||| |||||||||||||| ||| | ||||||||||| ||||
Sbjct: 8 tgctgtgtggaagactagtgattttgttgttttgacgtactatgacaacaaatcac 63
>RF00053;mir-7;AALT01636026.1/624-710 42254:Sorex araneus
(European shrew)
Length = 87
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 29 tggaagacttgtgattttgttgtt 52
||||||||||||||||||||||||
Sbjct: 15 tggaagacttgtgattttgttgtt 38
>RF00053;mir-7;AANH01008709.1/44998-44909 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 90
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 27 tgtggaagacttgtgattttgttgttct 54
||||||||||| ||||||||||||||||
Sbjct: 13 tgtggaagactagtgattttgttgttct 40
>RF00053;mir-7;AAZO01007227.1/5979-6065 121224:Pediculus humanus
corporis (human body louse)
Length = 87
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 27 tgtggaagacttgtgattttgttgttct 54
||||||||||| ||||||||||||||||
Sbjct: 14 tgtggaagactagtgattttgttgttct 41
>RF00053;mir-7;AAJJ01000341.1/22410-22324 7070:Tribolium castaneum
(red flour beetle)
Length = 87
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 27 tgtggaagacttgtgattttgttgttct 54
||||||||||| ||||||||||||||||
Sbjct: 13 tgtggaagactagtgattttgttgttct 40
>RF00053;mir-7;AAGW01390325.1/1387-1301 9986:Oryctolagus cuniculus
(rabbit)
Length = 87
Score = 46.1 bits (23), Expect = 9e-05
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 22 tgctatgtggaagacttgtgattttgttgttctgatatgatatgacaacaagtcacagcc 81
|||| ||||||||||| ||||||||||||| ||| || | |||||||||||||||
Sbjct: 9 tgctgtgtggaagactagtgattttgttgtcctggaatagctcggcaacaagtcacagcc 68
Query: 82 agcctca 88
|||||||
Sbjct: 69 agcctca 75
>RF00053;mir-7;AAWZ01040467.1/5860-5771 28377:Anolis carolinensis
(green anole)
Length = 90
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 29 tggaagacttgtgattttgttgttctg 55
||||||||| |||||||||||||||||
Sbjct: 15 tggaagactagtgattttgttgttctg 41
>RF00053;mir-7;AADN02062018.1/14238-14149 9031:Gallus gallus
(chicken)
Length = 90
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 27 tgtggaagacttgtgattttgttgttctgat 57
||||||||||| |||||||||||||| ||||
Sbjct: 14 tgtggaagactagtgattttgttgttatgat 44
>RF00053;mir-7;CAAB01001823.1/35304-35392 31033:Takifugu rubripes
Length = 89
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 22 tgctatgtggaagacttgtgattttgttgtt 52
|||| ||||||||||| ||||||||||||||
Sbjct: 8 tgctgtgtggaagactagtgattttgttgtt 38
>RF00053;mir-7;BAAE01231804.1/1152-1241 8090:Oryzias latipes
(Japanese medaka)
Length = 90
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 22 tgctatgtggaagacttgtgattttgttgtt 52
|||| ||||||||||| ||||||||||||||
Sbjct: 8 tgctgtgtggaagactagtgattttgttgtt 38
>RF00053;mir-7;ABJB010540838.1/8437-8350 6945:Ixodes scapularis
(black-legged tick)
Length = 88
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 29 tggaagacttgtgattttgttgttctg 55
||||||||| |||||||||||||||||
Sbjct: 15 tggaagactagtgattttgttgttctg 41
>RF00053;mir-7;AAPN01102459.1/801-712 9258:Ornithorhynchus
anatinus (platypus)
Length = 90
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 29 tggaagacttgtgattttgttgttct 54
||||||||| ||||||||||||||||
Sbjct: 15 tggaagactagtgattttgttgttct 40
>RF00053;mir-7;AAFR03045072.1/110951-110862 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 90
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 29 tggaagacttgtgattttgttgttct 54
||||||||| ||||||||||||||||
Sbjct: 15 tggaagactagtgattttgttgttct 40
>RF00053;mir-7;ABQF01047217.1/12512-12598 59729:Taeniopygia
guttata
Length = 87
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 27 tgtggaagacttgtgattttgttgtt 52
||||||||||| ||||||||||||||
Sbjct: 13 tgtggaagactagtgattttgttgtt 38
>RF00053;mir-7;ABQF01033208.1/2238-2148 59729:Taeniopygia guttata
Length = 91
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 27 tgtggaagacttgtgattttgttgtt 52
||||||||||| ||||||||||||||
Sbjct: 14 tgtggaagactagtgattttgttgtt 39
>RF00053;mir-7;AADN02064911.1/16831-16921 9031:Gallus gallus
(chicken)
Length = 91
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 27 tgtggaagacttgtgattttgttgtt 52
||||||||||| ||||||||||||||
Sbjct: 14 tgtggaagactagtgattttgttgtt 39
>RF00053;mir-7;CU571064.7/86583-86673 7955:Danio rerio (zebrafish)
Length = 91
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 27 tgtggaagacttgtgattttgttgtt 52
||||||||||| ||||||||||||||
Sbjct: 14 tgtggaagactagtgattttgttgtt 39
>RF00053;mir-7;CR933818.11/120065-120156 7955:Danio rerio
(zebrafish)
Length = 92
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 27 tgtggaagacttgtgattttgttgtt 52
||||||||||| ||||||||||||||
Sbjct: 13 tgtggaagactagtgattttgttgtt 38
>RF00053;mir-7;ABPJ01060011.1/287-197 35575:Mchenga conophoros
Length = 91
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 27 tgtggaagacttgtgattttgttgtt 52
||||||||||| ||||||||||||||
Sbjct: 13 tgtggaagactagtgattttgttgtt 38
>RF00053;mir-7;AAVX01096348.1/698-611 7868:Callorhinchus milii
(ghost shark)
Length = 88
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 27 tgtggaagacttgtgattttgttgtt 52
||||||||||| ||||||||||||||
Sbjct: 13 tgtggaagactagtgattttgttgtt 38
>RF00053;mir-7;AADG05003527.1/74880-74966 7460:Apis mellifera
(honey bee)
Length = 87
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 29 tggaagacttgtgattttgttgttct 54
||||||||| ||||||||||||||||
Sbjct: 15 tggaagactagtgattttgttgttct 40
