miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00104;mir-10;AAGU02055274.1/837-762 9785:Loxodonta africana
          (African savanna elephant)
          Length = 76

 Score =  143 bits (72), Expect = 5e-34
 Identities = 75/76 (98%)
 Strand = Plus / Plus

                                                                      
Query: 15 ctgtatataccctgtagatccgaatttgtgtaaggaattttgtggtcacaaattcgtatc 74
          |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1  ctgtatataccctgtagatccgaatttgtgtaaggaattttgtgatcacaaattcgtatc 60

                          
Query: 75 taggggaatatgtagt 90
          ||||||||||||||||
Sbjct: 61 taggggaatatgtagt 76




>RF00104;mir-10;AADN02014571.1/896-822 9031:Gallus gallus
          (chicken)
          Length = 75

 Score = 89.7 bits (45), Expect = 7e-18
 Identities = 64/69 (92%), Gaps = 1/69 (1%)
 Strand = Plus / Plus

                                                                      
Query: 22 taccctgtagatccgaatttgtgtaaggaattttgtggtcacaaattcgtatctagggga 81
          |||||||||||||||||||||||||| | |  ||| ||||||||||||||||||||||||
Sbjct: 8  taccctgtagatccgaatttgtgtaaaggaagttg-ggtcacaaattcgtatctagggga 66

                   
Query: 82 atatgtagt 90
          |||||||||
Sbjct: 67 atatgtagt 75




>RF00104;mir-10;AAVX01627291.1/678-603 7868:Callorhinchus milii
          (ghost shark)
          Length = 76

 Score = 81.8 bits (41), Expect = 2e-15
 Identities = 65/73 (89%)
 Strand = Plus / Plus

                                                                      
Query: 18 tatataccctgtagatccgaatttgtgtaaggaattttgtggtcacaaattcgtatctag 77
          ||||||||||||||||||||||||||||    ||  |||||||| |||||||||||||||
Sbjct: 4  tatataccctgtagatccgaatttgtgttgacaaaattgtggtcgcaaattcgtatctag 63

                       
Query: 78 gggaatatgtagt 90
          |||| ||||||||
Sbjct: 64 gggagtatgtagt 76




>RF00104;mir-10;AC148590.12/25796-25721 7924:Amia calva (bowfin)
          Length = 76

 Score = 65.9 bits (33), Expect = 1e-10
 Identities = 63/73 (86%)
 Strand = Plus / Plus

                                                                      
Query: 18 tatataccctgtagatccgaatttgtgtaaggaattttgtggtcacaaattcgtatctag 77
          |||||||||||||||||||||||||||| |  | |     ||||||||||||||||||||
Sbjct: 4  tatataccctgtagatccgaatttgtgtgaaaagtcacacggtcacaaattcgtatctag 63

                       
Query: 78 gggaatatgtagt 90
          |||| ||||||||
Sbjct: 64 gggagtatgtagt 76




>RF00104;mir-10;AC145793.2/105735-105809 8364:Xenopus (Silurana)
          tropicalis (western clawed frog)
          Length = 75

 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 15 ctgtatataccctgtagatccgaatttgtgt 45
          |||||| ||||||||||||||||||||||||
Sbjct: 1  ctgtatgtaccctgtagatccgaatttgtgt 31




>RF00104;mir-10;CAAB01000183.1/83579-83654 31033:Takifugu rubripes
          Length = 76

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 23 accctgtagatccgaatttgtgtaa 47
          |||||||||||||||||||||||||
Sbjct: 9  accctgtagatccgaatttgtgtaa 33




>RF00104;mir-10;EF594314.1/41875-41950 8153:Haplochromis burtoni
          Length = 76

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 23 accctgtagatccgaatttgtgtaa 47
          |||||||||||||||||||||||||
Sbjct: 9  accctgtagatccgaatttgtgtaa 33




>RF00104;mir-10;ABRQ01011010.1/8721-8795 9813:Procavia capensis
          (cape rock hyrax)
          Length = 75

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 18 tatataccctgtagatccgaatttgtgt 45
          ||||||||||||||| ||||||||||||
Sbjct: 4  tatataccctgtagaaccgaatttgtgt 31




>RF00104;mir-10;FJ497007.1/255336-255410 106881:Latimeria
          menadoensis (Menado coelacanth)
          Length = 75

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 18 tatataccctgtagatccgaatttgtgt 45
          ||||||||||||||| ||||||||||||
Sbjct: 4  tatataccctgtagaaccgaatttgtgt 31




>RF00104;mir-10;DQ481668.1/168869-168943 31033:Takifugu rubripes
          Length = 75

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 18 tatataccctgtagatccgaatttgtgt 45
          ||||||||||||||| ||||||||||||
Sbjct: 4  tatataccctgtagaaccgaatttgtgt 31




>RF00104;mir-10;BAAE01096977.1/80-154 8090:Oryzias latipes
          (Japanese medaka)
          Length = 75

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 18 tatataccctgtagatccgaatttgtgt 45
          ||||||||||||||| ||||||||||||
Sbjct: 4  tatataccctgtagaaccgaatttgtgt 31




>RF00104;mir-10;AAVX01239926.1/451-377 7868:Callorhinchus milii
          (ghost shark)
          Length = 75

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 18 tatataccctgtagatccgaatttgtgt 45
          ||||||||||||||| ||||||||||||
Sbjct: 4  tatataccctgtagaaccgaatttgtgt 31




>RF00104;mir-10;AC150390.2/218469-218395 7739:Branchiostoma
          floridae (Florida lancelet)
          Length = 75

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 22 taccctgtagatccgaatttgtgt 45
          ||||||||||||||||||||||||
Sbjct: 8  taccctgtagatccgaatttgtgt 31




>RF00104;mir-10;AC165428.1/216964-216881 7668:Strongylocentrotus
          purpuratus
          Length = 84

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 23 accctgtagatccgaatttgtgt 45
          |||||||||||||||||||||||
Sbjct: 9  accctgtagatccgaatttgtgt 31




>RF00104;mir-10;AY303234.1/14458-14526 39110:Sphoeroides nephelus
          Length = 69

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 23 accctgtagatccgaatttgtgt 45
          |||||||||||||||||||||||
Sbjct: 9  accctgtagatccgaatttgtgt 31




>RF00104;mir-10;AAQB01008633.1/164536-164458 7260:Drosophila
          willistoni
          Length = 79

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 22 taccctgtagatccgaatttgt 43
          ||||||||||||||||||||||
Sbjct: 8  taccctgtagatccgaatttgt 29




>RF00104;mir-10;AAPT01019387.1/166139-166214 7222:Drosophila
          grimshawi
          Length = 76

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 22 taccctgtagatccgaatttgt 43
          ||||||||||||||||||||||
Sbjct: 8  taccctgtagatccgaatttgt 29




>RF00104;mir-10;AAPU01011054.1/176581-176658 7230:Drosophila
          mojavensis
          Length = 78

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 22 taccctgtagatccgaatttgt 43
          ||||||||||||||||||||||
Sbjct: 8  taccctgtagatccgaatttgt 29




>RF00104;mir-10;AAJJ01000198.1/34838-34768 7070:Tribolium
          castaneum (red flour beetle)
          Length = 71

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 22 taccctgtagatccgaatttgt 43
          ||||||||||||||||||||||
Sbjct: 8  taccctgtagatccgaatttgt 29




>RF00104;mir-10;ABJB011126277.1/3833-3903 6945:Ixodes scapularis
          (black-legged tick)
          Length = 71

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 22 taccctgtagatccgaatttgt 43
          ||||||||||||||||||||||
Sbjct: 8  taccctgtagatccgaatttgt 29