miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00104;mir-10;ABRQ01011010.1/8721-8795 9813:Procavia capensis
          (cape rock hyrax)
          Length = 75

 Score =  133 bits (67), Expect = 5e-31
 Identities = 73/75 (97%)
 Strand = Plus / Plus

                                                                      
Query: 19 ctatatataccctgtagaaccgaatttgtgtggtacccacatagtcacagattcgattct 78
          ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 1  ctatatataccctgtagaaccgaatttgtgtggtatccacgtagtcacagattcgattct 60

                         
Query: 79 aggggaatatatggt 93
          |||||||||||||||
Sbjct: 61 aggggaatatatggt 75




>RF00104;mir-10;DQ481668.1/168869-168943 31033:Takifugu rubripes
          Length = 75

 Score = 91.7 bits (46), Expect = 2e-18
 Identities = 67/74 (90%)
 Strand = Plus / Plus

                                                                      
Query: 19 ctatatataccctgtagaaccgaatttgtgtggtacccacatagtcacagattcgattct 78
          |||||||||||||||||||||||||||||||| |  |  || ||||||||||||||||||
Sbjct: 1  ctatatataccctgtagaaccgaatttgtgtgatggcgtcaaagtcacagattcgattct 60

                        
Query: 79 aggggaatatatgg 92
          |||||| |||||||
Sbjct: 61 aggggagtatatgg 74




>RF00104;mir-10;AC145806.2/102674-102746 8364:Xenopus (Silurana)
          tropicalis (western clawed frog)
          Length = 73

 Score = 87.7 bits (44), Expect = 3e-17
 Identities = 68/75 (90%), Gaps = 2/75 (2%)
 Strand = Plus / Plus

                                                                      
Query: 19 ctatatataccctgtagaaccgaatttgtgtggtacccacatagtcacagattcgattct 78
          |||||| ||||||||||||||||||||||||||| |  ||  ||||||||||||||||||
Sbjct: 1  ctatatgtaccctgtagaaccgaatttgtgtggttcgtac--agtcacagattcgattct 58

                         
Query: 79 aggggaatatatggt 93
          ||||| |||||||||
Sbjct: 59 agggggatatatggt 73




>RF00104;mir-10;BAAE01096977.1/80-154 8090:Oryzias latipes
          (Japanese medaka)
          Length = 75

 Score = 69.9 bits (35), Expect = 6e-12
 Identities = 65/75 (86%)
 Strand = Plus / Plus

                                                                      
Query: 19 ctatatataccctgtagaaccgaatttgtgtggtacccacatagtcacagattcgattct 78
          ||||||||||||||||||||||||||||||||     | |  | ||||||||||||||||
Sbjct: 1  ctatatataccctgtagaaccgaatttgtgtgaagaacgctcaatcacagattcgattct 60

                         
Query: 79 aggggaatatatggt 93
          |||||| ||||||||
Sbjct: 61 aggggagtatatggt 75




>RF00104;mir-10;FJ497007.1/255336-255410 106881:Latimeria
          menadoensis (Menado coelacanth)
          Length = 75

 Score = 63.9 bits (32), Expect = 4e-10
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                          
Query: 19 ctatatataccctgtagaaccgaatttgtgtg 50
          ||||||||||||||||||||||||||||||||
Sbjct: 1  ctatatataccctgtagaaccgaatttgtgtg 32




>RF00104;mir-10;AAVX01239926.1/451-377 7868:Callorhinchus milii
          (ghost shark)
          Length = 75

 Score = 61.9 bits (31), Expect = 2e-09
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 19 ctatatataccctgtagaaccgaatttgtgt 49
          |||||||||||||||||||||||||||||||
Sbjct: 1  ctatatataccctgtagaaccgaatttgtgt 31




>RF00104;mir-10;ABPM01028404.1/870-945 106582:Maylandia zebra
          (zebra mbuna)
          Length = 76

 Score = 58.0 bits (29), Expect = 2e-08
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                      
Query: 19 ctatatataccctgtagaaccgaatttgtgtggtacccacatagtcacagattcgattct 78
          |||||||||||||||||||||||||| ||||| |     || | ||||||||||||||||
Sbjct: 1  ctatatataccctgtagaaccgaattggtgtgatgaaaccagattcacagattcgattct 60

               
Query: 79 agggg 83
          |||||
Sbjct: 61 agggg 65




>RF00104;mir-10;AB232922.1/86430-86356 8090:Oryzias latipes
          (Japanese medaka)
          Length = 75

 Score = 58.0 bits (29), Expect = 2e-08
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                           
Query: 19 ctatatataccctgtagaaccgaatttgtgtgg 51
          |||||| ||||||||||||||||||||||||||
Sbjct: 1  ctatatgtaccctgtagaaccgaatttgtgtgg 33




>RF00104;mir-10;CAAB01001327.1/34126-34200 31033:Takifugu rubripes
          Length = 75

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                          
Query: 19 ctatatataccctgtagaaccgaatttgtgtg 50
          |||||| |||||||||||||||||||||||||
Sbjct: 1  ctatatgtaccctgtagaaccgaatttgtgtg 32




>RF00104;mir-10;AC148590.12/25796-25721 7924:Amia calva (bowfin)
          Length = 76

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                          
Query: 19 ctatatataccctgtagaaccgaatttgtgtg 50
          |||||||||||||||||| |||||||||||||
Sbjct: 1  ctatatataccctgtagatccgaatttgtgtg 32




>RF00104;mir-10;BX546447.8/26541-26615 7955:Danio rerio
          (zebrafish)
          Length = 75

 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 19 ctatatataccctgtagaaccgaatttgtgt 49
          ||||||||||||||||||||||||| |||||
Sbjct: 1  ctatatataccctgtagaaccgaatgtgtgt 31




>RF00104;mir-10;BX005254.9/84183-84108 7955:Danio rerio
          (zebrafish)
          Length = 76

 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 19 ctatatataccctgtagaaccgaatttgtgt 49
          |||||| ||||||||||||||||||||||||
Sbjct: 1  ctatatgtaccctgtagaaccgaatttgtgt 31




>RF00104;mir-10;EU025715.1/118732-118806 8030:Salmo salar
          (Atlantic salmon)
          Length = 75

 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 19 ctatatataccctgtagaaccgaatttgtgt 49
          |||||| ||||||||||||||||||||||||
Sbjct: 1  ctatatgtaccctgtagaaccgaatttgtgt 31




>RF00104;mir-10;AAVX01627291.1/678-603 7868:Callorhinchus milii
          (ghost shark)
          Length = 76

 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 19 ctatatataccctgtagaaccgaatttgtgt 49
          |||||||||||||||||| ||||||||||||
Sbjct: 1  ctatatataccctgtagatccgaatttgtgt 31




>RF00104;mir-10;AAGU02055274.1/837-762 9785:Loxodonta africana
          (African savanna elephant)
          Length = 76

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 22 tatataccctgtagaaccgaatttgtgt 49
          ||||||||||||||| ||||||||||||
Sbjct: 4  tatataccctgtagatccgaatttgtgt 31




>RF00104;mir-10;AC150390.2/218469-218395 7739:Branchiostoma
          floridae (Florida lancelet)
          Length = 75

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                          
Query: 19 ctatatataccctgtagaaccgaatttgtgtg 50
          |||||| ||||||||||| |||||||||||||
Sbjct: 1  ctatatgtaccctgtagatccgaatttgtgtg 32




>RF00104;mir-10;AAWZ01028329.1/91871-91943 28377:Anolis
          carolinensis (green anole)
          Length = 73

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 20 tatatataccctgtagaaccgaatttgtgtg 50
          ||||| |||||||||||| ||||||||||||
Sbjct: 2  tatatgtaccctgtagaatcgaatttgtgtg 32




>RF00104;mir-10;AADN02014571.1/896-822 9031:Gallus gallus
          (chicken)
          Length = 75

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 19 ctatatataccctgtagaaccgaatttgtgt 49
          |||||| ||||||||||| ||||||||||||
Sbjct: 1  ctatatgtaccctgtagatccgaatttgtgt 31




>RF00104;mir-10;FJ356145.1/1191-1265 8022:Oncorhynchus mykiss
          (rainbow trout)
          Length = 75

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 27 accctgtagaaccgaatttgtgt 49
          |||||||||||||||||||||||
Sbjct: 9  accctgtagaaccgaatttgtgt 31




>RF00104;mir-10;BAAE01206467.1/1361-1287 8090:Oryzias latipes
          (Japanese medaka)
          Length = 75

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 25 ataccctgtagaaccgaatttgtgtgg 51
          ||||||||||||||||||| |||||||
Sbjct: 7  ataccctgtagaaccgaatgtgtgtgg 33