miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00254;mir-16;ABRQ01058087.1/3558-3638 9813:Procavia capensis
(cape rock hyrax)
Length = 81
Score = 145 bits (73), Expect = 1e-34
Identities = 79/81 (97%)
Strand = Plus / Plus
Query: 8 gttccgctctagcagcacgtaaatattggcgtagtgaaataaatattaaacaccaatatt 67
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 gttccactctagcagcacgtaaatattggcgtagtaaaataaatattaaacaccaatatt 60
Query: 68 attgtgctgctttagtgtgac 88
|||||||||||||||||||||
Sbjct: 61 attgtgctgctttagtgtgac 81
>RF00254;mir-16;AADN02021066.1/63731-63651 9031:Gallus gallus
(chicken)
Length = 81
Score = 95.6 bits (48), Expect = 1e-19
Identities = 66/72 (91%)
Strand = Plus / Plus
Query: 8 gttccgctctagcagcacgtaaatattggcgtagtgaaataaatattaaacaccaatatt 67
||||||| ||||||||||||||||||||| ||||| ||||||| |||||| ||||||||
Sbjct: 1 gttccgccctagcagcacgtaaatattggtgtagtaaaataaaccttaaaccccaatatt 60
Query: 68 attgtgctgctt 79
||||||||||||
Sbjct: 61 attgtgctgctt 72
>RF00254;mir-16;AAPN01094471.1/3343-3419 9258:Ornithorhynchus
anatinus (platypus)
Length = 77
Score = 77.8 bits (39), Expect = 2e-14
Identities = 67/76 (88%), Gaps = 4/76 (5%)
Strand = Plus / Plus
Query: 12 cgctctagcagcacgtaaatattggcgtagtgaaataaatattaaacaccaatattattg 71
||||||||||||||||||||||||| |||||| || | |||||| ||||||||||||
Sbjct: 5 cgctctagcagcacgtaaatattggtgtagtg----aagtcttaaaccccaatattattg 60
Query: 72 tgctgctttagtgtga 87
||||||||||| ||||
Sbjct: 61 tgctgctttagcgtga 76
>RF00254;mir-16;AAPY01269253.1/1011-1090 37347:Tupaia belangeri
(northern tree shrew)
Length = 80
Score = 69.9 bits (35), Expect = 6e-12
Identities = 68/75 (90%), Gaps = 3/75 (4%)
Strand = Plus / Plus
Query: 8 gttccgctctagcagcacgta-aatattggcgtagtgaaataaatattaaacaccaatat 66
||||| ||||||||||||||| |||| ||| | |||||||||| |||||||||||| |||
Sbjct: 1 gttccactctagcagcacgtacaataatggggaagtgaaataa-tattaaacacca-tat 58
Query: 67 tattgtgctgcttta 81
|||||||||||||||
Sbjct: 59 tattgtgctgcttta 73
>RF00254;mir-16;ABQO011210750.1/1431-1352 9315:Macropus eugenii
(tammar wallaby)
Length = 80
Score = 65.9 bits (33), Expect = 9e-11
Identities = 61/69 (88%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 11 ccgctctagcagcacgtaaatattggcgtagtgaaataaatattaaacaccaatattatt 70
||||||||||||||||||||||||||||| |||| || | | | ||| |||||||||||
Sbjct: 4 ccgctctagcagcacgtaaatattggcgtcgtgagat-actggtgaaccccaatattatt 62
Query: 71 gtgctgctt 79
|||||||||
Sbjct: 63 gtgctgctt 71
>RF00254;mir-16;AAIY01049521.1/711-785 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 75
Score = 63.9 bits (32), Expect = 3e-10
Identities = 57/64 (89%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 18 agcagcacgtaaatattggcgtagtgaaataaatattaaacaccaatattattgtgctgc 77
||||||| |||||| |||| |||||||||||||| ||| || |||||||||||||||||
Sbjct: 8 agcagcatataaatactggcatagtgaaataaatactaa-catcaatattattgtgctgc 66
Query: 78 ttta 81
||||
Sbjct: 67 ttta 70
>RF00254;mir-16;ABQF01022934.1/40019-40098 59729:Taeniopygia
guttata
Length = 80
Score = 63.9 bits (32), Expect = 3e-10
Identities = 63/72 (87%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 8 gttccgctctagcagcacgtaaatattggcgtagtgaaataaatattaaacaccaatatt 67
||||||| ||||||||||||||||||||| || || ||| ||| || ||| ||||||||
Sbjct: 1 gttccgccctagcagcacgtaaatattggagt-gtcaaagaaaccttcaaccccaatatt 59
Query: 68 attgtgctgctt 79
||||||||||||
Sbjct: 60 attgtgctgctt 71
>RF00254;mir-16;AAVX01576107.1/322-406 7868:Callorhinchus milii
(ghost shark)
Length = 85
Score = 56.0 bits (28), Expect = 8e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 15 tctagcagcacgtaaatattggcgtagtgaaa 46
||||||||||||||||||||||||| ||||||
Sbjct: 8 tctagcagcacgtaaatattggcgtggtgaaa 39
>RF00254;mir-16;BAAF04019869.1/1288-1368 8090:Oryzias latipes
(Japanese medaka)
Length = 81
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 12 cgctctagcagcacgtaaatattggcgt 39
|||| |||||||||||||||||||||||
Sbjct: 5 cgctgtagcagcacgtaaatattggcgt 32
>RF00254;mir-16;AADN02005381.1/19775-19853 9031:Gallus gallus
(chicken)
Length = 79
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 14 ctctagcagcacgtaaatattgg 36
|||||||||||||||||||||||
Sbjct: 7 ctctagcagcacgtaaatattgg 29
