miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00051;mir-17;ABRQ01318668.1/84-4 9813:Procavia capensis (cape
rock hyrax)
Length = 81
Score = 107 bits (54), Expect = 2e-23
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 1 ttggccatgtcaaagtgcttacagtgcaggtagcttcttgagatctactgcactgcaagc 60
|||||||||| |||||||||||||||||||||| || ||||||||||||| |||||||
Sbjct: 3 ttggccatgtaaaagtgcttacagtgcaggtagttttcagagatctactgcaatgcaagc 62
Query: 61 acttcttacattaccatg 78
||||||||||||||||||
Sbjct: 63 acttcttacattaccatg 80
>RF00051;mir-17;AAGV020837898.1/118-39 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 80
Score = 95.6 bits (48), Expect = 8e-20
Identities = 70/76 (92%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 3 ggccatgtcaaagtgcttacagtgcaggtagcttcttgagatctactgcactgcaagcac 62
|||| ||| ||||||||| |||||||||||| || ||||||||||||||| |||||||||
Sbjct: 5 ggccgtgtaaaagtgcttgcagtgcaggtagttt-ttgagatctactgcaatgcaagcac 63
Query: 63 ttcttacattaccatg 78
||||||||||||||||
Sbjct: 64 ttcttacattaccatg 79
>RF00051;mir-17;AAVX01531971.1/673-753 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 61.9 bits (31), Expect = 1e-09
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 7 atgtcaaagtgcttacagtgcaggtagcttcttgagatctactgcactgcaagcacttc 65
||||||||||||||||||||||||||| |||| | |||||||||| || | |||||||
Sbjct: 9 atgtcaaagtgcttacagtgcaggtagtgtcttaaaatctactgcagtgaaggcacttc 67
>RF00051;mir-17;CAAB01000095.1/5425-5345 31033:Takifugu rubripes
Length = 81
Score = 58.0 bits (29), Expect = 2e-08
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 8 tgtcaaagtgcttacagtgcaggtagcttcttgagatctactgca 52
|||||||||||||||||||||||||| || ||| ||||||||||
Sbjct: 10 tgtcaaagtgcttacagtgcaggtagtttgatgacatctactgca 54
>RF00051;mir-17;AAPN01018584.1/1527-1606 9258:Ornithorhynchus
anatinus (platypus)
Length = 80
Score = 54.0 bits (27), Expect = 3e-07
Identities = 58/67 (86%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 12 aaagtgcttacagtgcaggtagcttcttgagatctactgcactgcaagcacttcttacat 71
||||||||||||||||||||||||| || | |||||||| || |||||||||| |||
Sbjct: 14 aaagtgcttacagtgcaggtagctt-ttagtacctactgcaatgtaagcacttctagcat 72
Query: 72 taccatg 78
|||||||
Sbjct: 73 taccatg 79
>RF00051;mir-17;AAHX01085677.1/1620-1701 10116:Rattus norvegicus
(Norway rat)
Length = 82
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 7 atgtcaaagtgcttacagtgcaggtag 33
|||||||||||||||||||||||||||
Sbjct: 9 atgtcaaagtgcttacagtgcaggtag 35
>RF00051;mir-17;AADN02029366.1/35604-35522 9031:Gallus gallus
(chicken)
Length = 83
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 7 atgtcaaagtgcttacagtgcaggtag 33
|||||||||||||||||||||||||||
Sbjct: 9 atgtcaaagtgcttacagtgcaggtag 35
>RF00051;mir-17;CAAK05051440.1/16292-16212 7955:Danio rerio
(zebrafish)
Length = 81
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 8 tgtcaaagtgcttacagtgcaggtag 33
||||||||||||||||||||||||||
Sbjct: 10 tgtcaaagtgcttacagtgcaggtag 35
>RF00051;mir-17;CAAK05029381.1/11768-11850 7955:Danio rerio
(zebrafish)
Length = 83
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 8 tgtcaaagtgcttacagtgcaggtag 33
||||||||||||||||||||||||||
Sbjct: 10 tgtcaaagtgcttacagtgcaggtag 35
>RF00051;mir-17;AANH01000396.1/151542-151460 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 83
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 8 tgtcaaagtgcttacagtgcaggtag 33
||||||||||||||||||||||||||
Sbjct: 10 tgtcaaagtgcttacagtgcaggtag 35
>RF00051;mir-17;AANH01005312.1/96166-96086 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 81
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 8 tgtcaaagtgcttacagtgcaggtag 33
||||||||||||||||||||||||||
Sbjct: 10 tgtcaaagtgcttacagtgcaggtag 35
>RF00051;mir-17;BAAF04006740.1/10494-10412 8090:Oryzias latipes
(Japanese medaka)
Length = 83
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 8 tgtcaaagtgcttacagtgcaggtag 33
||||||||||||||||||||||||||
Sbjct: 10 tgtcaaagtgcttacagtgcaggtag 35
>RF00051;mir-17;BAAF04019480.1/14298-14217 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 8 tgtcaaagtgcttacagtgcaggtag 33
||||||||||||||||||||||||||
Sbjct: 10 tgtcaaagtgcttacagtgcaggtag 35
>RF00051;mir-17;CAAB01003114.1/25632-25550 31033:Takifugu rubripes
Length = 83
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 caaagtgcttacagtgcaggtag 33
|||||||||||||||||||||||
Sbjct: 13 caaagtgcttacagtgcaggtag 35
>RF00051;mir-17;ABQF01018395.1/1087-1166 59729:Taeniopygia guttata
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 aaagtgcttacagtgcaggtag 33
||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtag 35
>RF00051;mir-17;AADN02013295.1/455-376 9031:Gallus gallus
(chicken)
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 aaagtgcttacagtgcaggtag 33
||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtag 35
>RF00051;mir-17;CAAE01014998.1/174612-174696 99883:Tetraodon
nigroviridis
Length = 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 aaagtgcttacagtgcaggtag 33
||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtag 35
>RF00051;mir-17;ABPJ01055347.1/275-359 35575:Mchenga conophoros
Length = 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 aaagtgcttacagtgcaggtag 33
||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtag 35
>RF00051;mir-17;BAAF04070900.1/19468-19386 8090:Oryzias latipes
(Japanese medaka)
Length = 83
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 aaagtgcttacagtgcaggtag 33
||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtag 35
