miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00245;mir-19;AADN02029366.1/35306-35235 9031:Gallus gallus
(chicken)
Length = 72
Score = 125 bits (63), Expect = 9e-29
Identities = 69/71 (97%)
Strand = Plus / Plus
Query: 8 tctgttcgttttgcatagttgcactacaagaagaatgtagttgtgcaaatctatgcaaaa 67
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 2 tctgttagttttgcatagttgcactacaggaagaatgtagttgtgcaaatctatgcaaaa 61
Query: 68 ctgatggtggc 78
|||||||||||
Sbjct: 62 ctgatggtggc 72
>RF00245;mir-19;BAAF04006740.1/10225-10154 8090:Oryzias latipes
(Japanese medaka)
Length = 72
Score = 89.7 bits (45), Expect = 5e-18
Identities = 62/65 (95%), Gaps = 2/65 (3%)
Strand = Plus / Plus
Query: 15 gttttgcatagttgcactacaagaaga-atgtagttgtgcaaatctatgcaaaactgatg 73
||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||
Sbjct: 9 gttttgcatagttgcactacaagaatagatg-agttgtgcaaatctatgcaaaactgatg 67
Query: 74 gtggc 78
|||||
Sbjct: 68 gtggc 72
>RF00245;mir-19;AAPN01106467.1/17825-17895 9258:Ornithorhynchus
anatinus (platypus)
Length = 71
Score = 77.8 bits (39), Expect = 2e-14
Identities = 49/51 (96%), Gaps = 1/51 (1%)
Strand = Plus / Plus
Query: 21 catagttgcactacaagaagaatgtagttgtgcaaatctatgcaaaactga 71
|||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 15 cataattgcactacaagaagaatgtag-tgtgcaaatctatgcaaaactga 64
>RF00245;mir-19;BAAE01210639.1/2145-2074 8090:Oryzias latipes
(Japanese medaka)
Length = 72
Score = 73.8 bits (37), Expect = 3e-13
Identities = 66/73 (90%), Gaps = 2/73 (2%)
Strand = Plus / Plus
Query: 7 ctctgttcgttttgcatagttgcactacaagaaga-atgtagttgtgcaaatctatgcaa 65
||||||| |||||||||||||||||| |||||||| ||| |||||||||||||||||||
Sbjct: 1 ctctgttagttttgcatagttgcactgcaagaagagatg-cgttgtgcaaatctatgcaa 59
Query: 66 aactgatggtggc 78
| ||||| |||||
Sbjct: 60 agctgatagtggc 72
>RF00245;mir-19;ABPJ01018453.1/307-378 35575:Mchenga conophoros
Length = 72
Score = 71.9 bits (36), Expect = 1e-12
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 15 gttttgcatagttgcactacaagaagaatgtagttgtgcaaatctatgcaaaactgatgg 74
||||||| ||||||| || ||||||||| |||||||||||||||||||||||||| ||
Sbjct: 9 gttttgcgtagttgcgctgcaagaagaaataagttgtgcaaatctatgcaaaactgacgg 68
Query: 75 tggc 78
||||
Sbjct: 69 tggc 72
>RF00245;mir-19;ABRR01406939.1/1751-1822 30538:Lama pacos (alpaca)
Length = 72
Score = 58.0 bits (29), Expect = 2e-08
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 15 gttttgcatagttgcactacaagaagaatgtagttgtgcaaatctatgcaaaa 67
|||||| ||| || ||||| |||||||||||| ||||||||| ||||||||||
Sbjct: 9 gttttgtatactttcactataagaagaatgtaattgtgcaaacctatgcaaaa 61
>RF00245;mir-19;AAPN01215107.1/7965-8033 9258:Ornithorhynchus
anatinus (platypus)
Length = 69
Score = 56.0 bits (28), Expect = 7e-08
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 33 acaagaagaatgtagttgtgcaaatctatgcaaaactgat 72
|||||||||||||||||| | |||||||| ||||||||||
Sbjct: 24 acaagaagaatgtagttgcgtaaatctatacaaaactgat 63
>RF00245;mir-19;AAPN01282049.1/2127-2189 9258:Ornithorhynchus
anatinus (platypus)
Length = 63
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 47 gttgtgcaaatctatgcaaaactga 71
|||||||||||||||||||||||||
Sbjct: 32 gttgtgcaaatctatgcaaaactga 56
>RF00245;mir-19;CAAK05029381.1/12427-12502 7955:Danio rerio
(zebrafish)
Length = 76
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 49 tgtgcaaatctatgcaaaactgatggtggc 78
|||||||||| ||||||||||||| |||||
Sbjct: 47 tgtgcaaatccatgcaaaactgattgtggc 76
