miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00245;mir-19;CAAA01011593.1/1296-1217 10090:Mus musculus (house
mouse)
Length = 80
Score = 139 bits (70), Expect = 7e-33
Identities = 76/78 (97%)
Strand = Plus / Plus
Query: 12 tacggttagttttgcagatttgcagttcagcgtatatgtggatatatggctgtgcaaatc 71
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 tacgattagttttgcagatttgcagttcagcgtatatgtgaatatatggctgtgcaaatc 60
Query: 72 catgcaaaactgattgtg 89
||||||||||||||||||
Sbjct: 61 catgcaaaactgattgtg 78
>RF00245;mir-19;AAGW01169230.1/2171-2250 9986:Oryctolagus
cuniculus (rabbit)
Length = 80
Score = 101 bits (51), Expect = 2e-21
Identities = 69/75 (92%)
Strand = Plus / Plus
Query: 17 ttagttttgcagatttgcagttcagcgtatatgtggatatatggctgtgcaaatccatgc 76
|||||||||||| |||||| ||||||||||| || ||| ||||||||||||||||||||
Sbjct: 6 ttagttttgcaggtttgcatttcagcgtatacctgtatacatggctgtgcaaatccatgc 65
Query: 77 aaaactgattgtgat 91
|||||||||||||||
Sbjct: 66 aaaactgattgtgat 80
>RF00245;mir-19;AAEX02004024.1/8061-8140 9615:Canis lupus
familiaris (dog)
Length = 80
Score = 93.7 bits (47), Expect = 4e-19
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 14 cggttagttttgcagatttgcagttcagcgtatatgtggatatatggctgtgcaaatcca 73
||||||||||||||| |||||| ||||||||| |||| ||||| |||||||||||||||
Sbjct: 3 cggttagttttgcaggtttgcatttcagcgtacttgtgcatatagggctgtgcaaatcca 62
Query: 74 tgcaaaactga 84
|||||||||||
Sbjct: 63 tgcaaaactga 73
>RF00245;mir-19;AAQR01356969.1/112-34 30611:Otolemur garnettii
(small-eared galago)
Length = 79
Score = 93.7 bits (47), Expect = 4e-19
Identities = 69/75 (92%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 17 ttagttttgcagatttgcagttcagcgtatatgtggatatatggctgtgcaaatccatgc 76
|||||||||||| |||||| |||||||||| |||| |||| ||||||||||||||||||
Sbjct: 6 ttagttttgcaggtttgcatttcagcgtat-tgtgtatatcaggctgtgcaaatccatgc 64
Query: 77 aaaactgattgtgat 91
|||||||||||||||
Sbjct: 65 aaaactgattgtgat 79
>RF00245;mir-19;AADA01312424.1/2142-2221 9598:Pan troglodytes
(chimpanzee)
Length = 80
Score = 77.8 bits (39), Expect = 2e-14
Identities = 66/75 (88%)
Strand = Plus / Plus
Query: 17 ttagttttgcagatttgcagttcagcgtatatgtggatatatggctgtgcaaatccatgc 76
|||||||||||| |||||| |||||||||||| | | |||||||||||||||||||
Sbjct: 6 ttagttttgcaggtttgcatttcagcgtatatataaaggggtggctgtgcaaatccatgc 65
Query: 77 aaaactgattgtgat 91
|||||||||||||||
Sbjct: 66 aaaactgattgtgat 80
>RF00245;mir-19;AAKN02053349.1/40109-40028 10141:Cavia porcellus
(domestic guinea pig)
Length = 82
Score = 75.8 bits (38), Expect = 9e-14
Identities = 68/77 (88%), Gaps = 2/77 (2%)
Strand = Plus / Plus
Query: 17 ttagttttgcagatttgcagttcagcgtatatgtggatata--tggctgtgcaaatccat 74
|||||||||||| |||||| ||||||||||| | || || |||||||||||||||||
Sbjct: 6 ttagttttgcaggtttgcatttcagcgtatagatatatctacatggctgtgcaaatccat 65
Query: 75 gcaaaactgattgtgat 91
|||||||||||||||||
Sbjct: 66 gcaaaactgattgtgat 82
>RF00245;mir-19;ABRQ01318667.1/1139-1062 9813:Procavia capensis
(cape rock hyrax)
Length = 78
Score = 75.8 bits (38), Expect = 9e-14
Identities = 65/73 (89%), Gaps = 2/73 (2%)
Strand = Plus / Plus
Query: 19 agttttgcagatttgcagttcagcgtatatgtggatatatggctgtgcaaatccatgcaa 78
|||||||||| |||||| |||||| | ||| | || |||||||||||||||||||||||
Sbjct: 8 agttttgcaggtttgcatttcagcatgtattt--atgtatggctgtgcaaatccatgcaa 65
Query: 79 aactgattgtgat 91
|||||||||||||
Sbjct: 66 aactgattgtgat 78
>RF00245;mir-19;AALT01065661.1/586-507 42254:Sorex araneus
(European shrew)
Length = 80
Score = 71.9 bits (36), Expect = 1e-12
Identities = 66/76 (86%)
Strand = Plus / Plus
Query: 16 gttagttttgcagatttgcagttcagcgtatatgtggatatatggctgtgcaaatccatg 75
||||||||||||| |||||| |||||||||||| || | |||||||||||||||||
Sbjct: 5 gttagttttgcaggtttgcatttcagcgtatataaatctacagggctgtgcaaatccatg 64
Query: 76 caaaactgattgtgat 91
||||||||| ||||||
Sbjct: 65 caaaactgactgtgat 80
>RF00245;mir-19;AAGV020837897.1/862-786 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 77
Score = 65.9 bits (33), Expect = 9e-11
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 59 ggctgtgcaaatccatgcaaaactgattgtgat 91
|||||||||||||||||||||||||||||||||
Sbjct: 45 ggctgtgcaaatccatgcaaaactgattgtgat 77
>RF00245;mir-19;AAGU02347239.1/371-298 9785:Loxodonta africana
(African savanna elephant)
Length = 74
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 54 tatatggctgtgcaaatccatgcaaaactga 84
|||||||||||||||||||||||||||||||
Sbjct: 37 tatatggctgtgcaaatccatgcaaaactga 67
>RF00245;mir-19;CAAK05029381.1/12427-12502 7955:Danio rerio
(zebrafish)
Length = 76
Score = 60.0 bits (30), Expect = 5e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 60 gctgtgcaaatccatgcaaaactgattgtg 89
||||||||||||||||||||||||||||||
Sbjct: 45 gctgtgcaaatccatgcaaaactgattgtg 74
>RF00245;mir-19;AAFR03056382.1/2211-2283 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 73
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 60 gctgtgcaaatccatgcaaaactgatt 86
|||||||||||||||||||||||||||
Sbjct: 42 gctgtgcaaatccatgcaaaactgatt 68
>RF00245;mir-19;AANH01000396.1/150925-150850 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 76
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 60 gctgtgcaaatccatgcaaaactgatt 86
|||||||||||||||||||||||||||
Sbjct: 45 gctgtgcaaatccatgcaaaactgatt 71
>RF00245;mir-19;ABRO01215612.1/2554-2625 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 72
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 60 gctgtgcaaatccatgcaaaactgattgtg 89
||||||||||||||||||||||||| ||||
Sbjct: 41 gctgtgcaaatccatgcaaaactgaatgtg 70
>RF00245;mir-19;ABQF01018395.1/1563-1636 59729:Taeniopygia guttata
Length = 74
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 60 gctgtgcaaatccatgcaaaactgattgtg 89
||||||||||||||||||||||||| ||||
Sbjct: 43 gctgtgcaaatccatgcaaaactgactgtg 72
>RF00245;mir-19;CR390304.1/227-301 9031:Gallus gallus (chicken)
Length = 75
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 60 gctgtgcaaatccatgcaaaactgattgtg 89
||||||||||||||||||||||||| ||||
Sbjct: 44 gctgtgcaaatccatgcaaaactgactgtg 73
>RF00245;mir-19;CAAK05051440.1/15749-15676 7955:Danio rerio
(zebrafish)
Length = 74
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 60 gctgtgcaaatccatgcaaaactgat 85
||||||||||||||||||||||||||
Sbjct: 43 gctgtgcaaatccatgcaaaactgat 68
>RF00245;mir-19;BAAF04019480.1/13479-13405 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 60 gctgtgcaaatccatgcaaaactgat 85
||||||||||||||||||||||||||
Sbjct: 44 gctgtgcaaatccatgcaaaactgat 69
>RF00245;mir-19;CAAE01014581.1/3627391-3627319 99883:Tetraodon
nigroviridis
Length = 73
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 60 gctgtgcaaatccatgcaaaactga 84
|||||||||||||||||||||||||
Sbjct: 42 gctgtgcaaatccatgcaaaactga 66
>RF00245;mir-19;CAAB01003114.1/25012-24940 31033:Takifugu rubripes
Length = 73
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 60 gctgtgcaaatccatgcaaaactga 84
|||||||||||||||||||||||||
Sbjct: 42 gctgtgcaaatccatgcaaaactga 66
>RF00245;mir-19;BAAF04006740.1/9884-9810 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 60 gctgtgcaaatccatgcaaaactga 84
|||||||||||||||||||||||||
Sbjct: 45 gctgtgcaaatccatgcaaaactga 69
>RF00245;mir-19;BX511227.7/25216-25142 7955:Danio rerio
(zebrafish)
Length = 75
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 60 gctgtgcaaatccatgcaaaact 82
|||||||||||||||||||||||
Sbjct: 44 gctgtgcaaatccatgcaaaact 66
