miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00653;mir-22;AAGU02129422.1/1672-1588 9785:Loxodonta africana
          (African savanna elephant)
          Length = 85

 Score =  168 bits (85), Expect = 8e-42
 Identities = 85/85 (100%)
 Strand = Plus / Plus

                                                                      
Query: 5  ggctgagccgcagtagttcttcagtggcaagctttatgtcctgacccagctaaagctgcc 64
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ggctgagccgcagtagttcttcagtggcaagctttatgtcctgacccagctaaagctgcc 60

                                   
Query: 65 agttgaagaactgttgccctctgcc 89
          |||||||||||||||||||||||||
Sbjct: 61 agttgaagaactgttgccctctgcc 85




>RF00653;mir-22;AAFR03054554.1/22241-22157 13616:Monodelphis
          domestica (gray short-tailed opossum)
          Length = 85

 Score = 97.6 bits (49), Expect = 2e-20
 Identities = 64/69 (92%)
 Strand = Plus / Plus

                                                                      
Query: 9  gagccgcagtagttcttcagtggcaagctttatgtcctgacccagctaaagctgccagtt 68
          ||||| ||| |||||||||||||| ||||||||||| || ||||||||||||||||||||
Sbjct: 5  gagccacagcagttcttcagtggcgagctttatgtcttgtcccagctaaagctgccagtt 64

                   
Query: 69 gaagaactg 77
          |||||||||
Sbjct: 65 gaagaactg 73




>RF00653;mir-22;CR353219.1/89-176 9031:Gallus gallus (chicken)
          Length = 88

 Score = 71.9 bits (36), Expect = 1e-12
 Identities = 62/70 (88%), Gaps = 3/70 (4%)
 Strand = Plus / Plus

                                                                      
Query: 14 gcagtagttcttcagtggcaagctttatgtcctgacc---cagctaaagctgccagttga 70
          |||| ||||||||||||||||||||||||||||   |    |||||||||||||||||||
Sbjct: 10 gcagcagttcttcagtggcaagctttatgtccttctctagtagctaaagctgccagttga 69

                    
Query: 71 agaactgttg 80
          ||||||||||
Sbjct: 70 agaactgttg 79




>RF00653;mir-22;BAAF04035139.1/3478-3391 8090:Oryzias latipes
          (Japanese medaka)
          Length = 88

 Score = 65.9 bits (33), Expect = 9e-11
 Identities = 68/79 (86%), Gaps = 3/79 (3%)
 Strand = Plus / Plus

                                                                      
Query: 5  ggctgagccgcagtagttcttcagtggcaagctttatgtcct---gacccagctaaagct 61
          |||||| || ||| ||||||||| ||||||||||||||| ||   |  ||||||||||||
Sbjct: 1  ggctgacccacagcagttcttcactggcaagctttatgttctcgtgcaccagctaaagct 60

                             
Query: 62 gccagttgaagaactgttg 80
          ||||| |||||||||||||
Sbjct: 61 gccagctgaagaactgttg 79




>RF00653;mir-22;CAAE01014999.1/1459406-1459318 99883:Tetraodon
          nigroviridis
          Length = 89

 Score = 56.0 bits (28), Expect = 8e-08
 Identities = 61/70 (87%), Gaps = 4/70 (5%)
 Strand = Plus / Plus

                                                                      
Query: 15 cagtagttcttcagtggcaagctttatgtcct--gaccca--gctaaagctgccagttga 70
          |||| |||||||| |||| |||||||||||||  |||||   ||||||||||||||||||
Sbjct: 11 cagtcgttcttcactggctagctttatgtcctccgaccccacgctaaagctgccagttga 70

                    
Query: 71 agaactgttg 80
          ||| ||||||
Sbjct: 71 agagctgttg 80




>RF00653;mir-22;CU442763.9/20980-21067 7955:Danio rerio
          (zebrafish)
          Length = 88

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 53 gctaaagctgccagttgaagaactgttg 80
          |||||||||||||| |||||||||||||
Sbjct: 52 gctaaagctgccagctgaagaactgttg 79




>RF00653;mir-22;AAWZ01029001.1/2472-2561 28377:Anolis carolinensis
          (green anole)
          Length = 90

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 29/30 (96%), Gaps = 1/30 (3%)
 Strand = Plus / Plus

                                        
Query: 52 agctaaagctgc-cagttgaagaactgttg 80
          |||||||||||| |||||||||||||||||
Sbjct: 52 agctaaagctgcgcagttgaagaactgttg 81




>RF00653;mir-22;CT030218.5/50207-50290 7955:Danio rerio
          (zebrafish)
          Length = 84

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 55 taaagctgccagttgaagaactgttg 80
          ||||||||||||||||||| ||||||
Sbjct: 50 taaagctgccagttgaagagctgttg 75




>RF00653;mir-22;BAAF04020956.1/20-107 8090:Oryzias latipes
          (Japanese medaka)
          Length = 88

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 55 taaagctgccagttgaagaactgttg 80
          ||||||||||||||||||| ||||||
Sbjct: 54 taaagctgccagttgaagagctgttg 79